1RU4


Conserved Protein Domain Family
Beta_helix

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pfam13229: Beta_helix (this model, PSSM-Id:289971 is obsolete and has been replaced by 463811)
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Right handed beta helix region
This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Statistics
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PSSM-Id: 289971
Aligned: 105 rows
Threshold Bit Score: 38.9325
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RU4_A        108 YGFYVTGDYW-----YFKGVEVTRa-GYQGAYVIGSHN--T---FEnTAFHH------NRNTGLEINNg-----gSYNTV 165  Dickeya chrys...
Q1RQ01        338 SAVSCAGEGAn---pTFSHVTISDs-ENVGLYIADHAEg-L---FQdCEIHN------NALAGIWVKNy------AKPII 397  vase tunicate
Q1RQ01        615 SGVQIRTGSNp----VIKMNKIWGg-QNGGILVYNSGLg-L---IErNEIFD------NAMAGVWIKTd------SNPLM 673  vase tunicate
Q8ZXB6        124 LGIYIYNSSDv----LISKADLAY--FHDCIYAEYTQSl-D---ISgASARY-------CRYGAHVMFs------KGVRL 180  Pyrobaculum a...
WP_012617996  296 eGIHVGMVSDs----VVENV-VAEq-NRIGLSISPNGVt-TgssIRnSVFRE------NTGSGLDLTYp-----aGGIAV 357  Methanosphaer...
XP_001565848 1122 ANILLDHFDGathetTITENTIYG--APYGVCVAHNSTvcS---MSkNEVHT-------CMDGFAFTSg------GHGCY 1183 Leishmania br...
XP_001314846  265 NIIIMTQQAQa----VFTETTVQKs-AQNGVVLRNQTKa-L---FEkCIFNEigrcaiISADKTEFFCdds--tiMKIGG 333  Trichomonas v...
XP_001990260  939 SGVQIRTGSNp----VIRGNKIWGg-QNGGVLVYNGGLg-L---LEqNEIFD------NAMAGVWIKTd------SNPTL 997  Drosophila gr...
WP_037342668  119 PAISVADRSEf----TLTRCRVNGa--RYGLVVEDSDG--T---VEgCEFSD------LSEDGIIIRIg------AAPTI 175  Salinispora t...
XP_001306000  308 SCVLVKKDSEv----SIFDSHIYDaeKANLVEATDGGIl-K---VKnCTLNGectnsiSSSIGASVLCenlelrrNVSST 379  Trichomonas v...
1RU4_A        166 INSDAYRNYdpkkngsmadgfGPKQK-QGPGNRFVGCRAWENsd----dGFDLFDs--PQKVVIENSWAFRNGinywnds 238  Dickeya chrys...
Q1RQ01        398 RRCHIHDGRd----------vGVFTF-DNGYGYFEKCDIHHNri----aGFEVKA---GANPTVVRCSIHHGQt------ 453  vase tunicate
Q1RQ01        674 RGNKIHDGRd----------gGICIF-NGGKGILEKNEIFRNaq----aGVLVST---NSHPQLRRNRIYDGFa------ 729  vase tunicate
Q8ZXB6        181 RESSFSDNYv-----------GVALM-YSDDVVVSDVKSSGNrewsegyGFLLA----ELRGVVKNCKAVDNV------- 237  Pyrobaculum a...
WP_012617996  358 DRCSITGNGv-----------GISAF-MVPSSHLADCDISDNvg----dGLSSST---GSFAVVRNCTVRANGg------ 412  Methanosphaer...
XP_001565848 1184 TANHIHDCTy----------sGVYVSdMAHPSLADSNCIENCgf----cGVLVDV---SGQGVFRRNTIRHCE------- 1239 Leishmania br...
XP_001314846  334 EGISISSCG--------------------QNTIVAKTQILECan----vGILSYV---VSTPVVRECTIKDCGr------ 380  Trichomonas v...
XP_001990260  998 KRNKIYDGRd----------gGICIF-NGGKGILEENDIFRNtq----aGVLIST---QSHPILRRNRIYDGQa------ 1053 Drosophila gr...
WP_037342668  176 RTSTITRCGn----------rGIYVY-QYGRPTIEACDISQTgh----aGV---AvvhQCAPVLRRCRIRDTRg------ 231  Salinispora t...
XP_001306000  380 SGGFIELRQcq---------lTTAVI-ENARFTAIGCDIFSTes----cGLATVG---QCDIVLDQTVIHNCRs------ 436  Trichomonas v...
1RU4_A        239 afagngNGFKLGGNQavGNHRITRSVAFGNVSKGFDQNNNAGg---VTVINNT 288  Dickeya chrysanthemi
Q1RQ01        454 ------GGIYIHARG---RGQFLENKIHSNQFAGLWVTSNSD----PTIRCNE 493  vase tunicate
Q1RQ01        730 ------AGIEITNGA---TAVLERNQVFNNKFGGIFLATGVS----CILTENR 769  vase tunicate
Q8ZXB6        238 ------HGFYVMYWGn-TALKITNCTVEGNY-FGVTLRGRNAt--gVEFIGNA 280  Pyrobaculum aerophilum
WP_012617996  413 ------NGLEFEHGG--A--EIVGNHIEENAGDGVHASDRGG----SDIHGNW 451  Methanosphaerula palustris
XP_001565848 1240 ------TGVVVFCGPt-TPFHMSHEEVTNAR-----ILTSTP-----IFTENT 1275 Leishmania braziliensis MHOM/BR/75/M2904
XP_001314846  381 ------SLIEVTDGA---ALRSIQNRFQGGCKQALFATHHTT----IASEGDT 420  Trichomonas vaginalis G3
XP_001990260 1054 ------AGVEITNNA---TATLEHNQIFKNKFGGLCLASGVQ----PITRGNN 1093 Drosophila grimshawi
WP_037342668  232 ------PAVSFARGCq-GTV--EECTTENTALPAI-EVAADAt---PTIVESV 271  Salinispora tropica
XP_001306000  437 ------NGAEFSELS---AVTATNCKFLANSGGGVSVSSTSAmfshCLFAGNA 480  Trichomonas vaginalis G3
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