4W8F


Conserved Protein Domain Family
AAA_9

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pfam12781: AAA_9 (this model, PSSM-Id:289547 is obsolete and has been replaced by 463702)
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ATP-binding dynein motor region D5
The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D5 ATP-binding region of the motor, but has lost its P-loop.
Statistics
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PSSM-Id: 289547
Aligned: 525 rows
Threshold Bit Score: 122.501
Created: 29-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4W8F_A       1935 KWlE-CGLDKNDYFLENMSIVMns--qdAVPF-LLDPSSHMITVI-SN-------Yygn--ktvLLSFLEe-gFVKR-LE 1998
Q170I1        375 TWcS-LGLPKDGLTVENATILLnc--nlRSPL-VVDPQGEIRRWL-VQ---------------------QdtkLISYnLD 428  yellow fever ...
Q4YUJ6        463 KL-SkQGLTLNSVCIENNIILEns---eKFPI-IIDPQMESLKWLiNNqkekskiI--------ITDINDk-mLYKQ-IE 527  Plasmodium be...
CBY08725     2823 QYhH-KGMPNDQLSLENTESLMsf---sKTPM-LIDQSGRAQSFL-KSyfae--------qkieSVDEHSd-aFQSS-VE 2886 Oikopleura di...
EGT57668      800 NWkT-KGLPADQLSLENGMIMFns---cHVPL-IIDPSGQVSTFL-SKfle----------kseTFKAAQs-dLITQ-IE 861  Caenorhabditi...
XP_003144405  578 NWsN-KGLPTDSLSQENAMILFnt---tEIPL-IIDPSGRASLFL-EEylkd--------kqleKVNANDs-nFLTQ-VE 641  eye worm
ERG80116     2607 YWkN-KGLPSDILSVENAMIIFns---vQIPL-LIDPSGRVSSFL-ENylke--------skveKLNAAQp-dFITQ-VE 2670 pig roundworm
XP_001328083  587 EMkH-NGFPSDDLSVENAQIIQis---tQRPLfVIDPTEHVVEWL-QSvlgp---------saeVLSSSHp-rFQHQ-VT 650  Trichomonas v...
XP_002604212 4063 QL-ElQGLPTNPVALDSSCFVTetlsnnSWVL-LCDPTSRAIPWL-TDy-----lKeg----fiISKYHD----LKSqLE 4126 Florida lancelet
EFO65172     4416 RW-VsNGLPRDSFSLTSACIAMss---kKVPL-LIDPQNQARRWA-ATclg-qdmRqqpsmtsqVIRIADp-nLHKV-IE 4486 Giardia lambl...
4W8F_A       1999 NAIRFGSVVIIQDG-EFF----DPIISRLISREFNHag--------nrVTVEI--------GDhE-VDV-SGDFKLFIHS 2055
Q170I1        429 EE------RILSQV-EEFaqshQHIIAVNLREANINhf----------sqLQTyhktyhsnKS-GtKQYaSA---LVVIT 487  yellow fever ...
Q4YUJ6        528 ECISYGYSIIIENAdEYI----DNTLYNVISKNIIKrk--------snYYINI--------ND-KeIIF-HPDFYIILHT 585  Plasmodium be...
CBY08725     2887 LALRFGKTLMIENI-TRL----SSFLVEVLKANVHTig--------trPSIKI--------SD-KvIDI-NPNFKLLLAS 2943 Oikopleura di...
EGT57668      862 LAIRFGKTIIIDDV-VEF----DPCLIPILRKDLSSqg--------prQVISF--------AG-KsIDF-NPDFRIFICT 918  Caenorhabditi...
XP_003144405  642 LAIRFGKFLLIDDV-NRV----EPTLISLLRKDFSNqg--------prRIVQI--------GE-KaIDY-NDNFRLYICS 698  eye worm
ERG80116     2671 LGVRFGKSLIVDDV-VYI----DPALMKLLRMELSNqg--------prHVVQI--------GD-KsLDY-NTDFRIFFCT 2727 pig roundworm
XP_001328083  651 LAIRFGKKLIIREA-DKV----PLCLYPFLNREFVMsn--------ghLTVCV--------GD-KfIDV-HPDFRLIIVT 707  Trichomonas v...
XP_002604212 4127 TCLTEGLFLILTDI-DLHllakDNRFNHVFRRRMSFltg------kapFKIIV--------GS-HeVEC-RPGFRLYMHT 4189 Florida lancelet
EFO65172     4487 QCLRTGTMLVIEGIsNNLfirnDARIKAAIVAHNLImsltlqsgdlraVEVRF--------GD-StIEV-PPTFSL-ILV 4555 Giardia lambl...
4W8F_A       2056 CDPSGD-IPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELN---NS- 2130
Q170I1        488 TEEIPY--HNKLKKTANVINFILDKSGLEVKLLVTIIKHENPSLEERKEALEQMIISSNETITNLEENILHILN---HSq 562  yellow fever ...
Q4YUJ6        586 QLSNPH-YQPEIQSTCSLINFTVTPDDLEEHLLSITLQNEFNQLYKKKKKLSLLKYDYMCQLSFLQSSILQKLT---DA- 660  Plasmodium be...
CBY08725     2944 KTLSYA-DLPSLSGLANPVIFSMTRKGLEHQLLSVALLAEQPELEEKMTTLVKKEEELRLKIIKIENDLLDTLI---KS- 3018 Oikopleura di...
EGT57668      919 RDDKVE-IRPNCSVQINIVNFTTTISALSAQLLDVAIHLEKPELEERSSSLLRDAELKKLELEDLEQLLLQQLA---SS- 993  Caenorhabditi...
XP_003144405  699 RNNLLR-LDQTSKAAVALICFSITQTGLASQMLGLAIQMEKPALETRLNELTGDVEQMKIKLDGIEQSLLQTLA---SS- 773  eye worm
ERG80116     2728 KNGQID-LPRSMKSAVTEVNFTTTRSGLASQMLGFAIKIEKPELESRSSELTRNIEEMKIKLDELEQILLQALA---SS- 2802 pig roundworm
XP_001328083  708 RDAAIK-LTAREKSLVSLVNFTVTKTALKAQLLTLALTTEMPELEEKHQEQLNESEQLKIELGKLEEGLLEILG---KA- 782  Trichomonas v...
XP_002604212 4190 TCM-PHeVPEEVAAYTSLVNFYQDRSGIEAELLDRFIRLEKTRVQDERTNLAQEKIGNMERLALLEDQMLNLL------- 4261 Florida lancelet
EFO65172     4556 SMCDIH-IPPDSFGDFTVVTFKATKEALEDLLLSVAVECEKPELENQRKHLQAAAAEDATTLLTLETQLLNLLSesqNSe 4634 Giardia lambl...
4W8F_A       2131 QGN-MLENDELMVTLNNLKKE 2150
Q170I1        563 LP--LIENEELYGTLQVSKQT 581  yellow fever mosquito
Q4YUJ6        661 KGD-ILEDVSLIENLEKTKLL 680  Plasmodium berghei
CBY08725     3019 EGN-ILDNDKLINSLQSSKKS 3038 Oikopleura dioica
EGT57668      994 QGN-LLENTALLDSLNKSKES 1013 Caenorhabditis brenneri
XP_003144405  774 EGS-LLDNTDLLDSLNKSKEN 793  eye worm
ERG80116     2803 EGS-LLDNTQLLDSLNKSKEN 2822 pig roundworm
XP_001328083  783 NPDtILQNKELIQSLDDKKKR 803  Trichomonas vaginalis G3
XP_002604212 4262 -----ASDTRLLNNLAVTKKL 4277 Florida lancelet
EFO65172     4635 EGQtLLDNAVLVNALNETQQR 4655 Giardia lamblia P15
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