Conserved Protein Domain Family
RAG1_imp_bd

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pfam12560: RAG1_imp_bd (this model, PSSM-Id:289337 is obsolete and has been replaced by 463629)
RAG1 importin binding
This region of RAG1 is responsible for binding to importin alpha.
Statistics
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PSSM-Id: 289337
Aligned: 17 rows
Threshold Bit Score: 365.96
Created: 27-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q28463         12 RPVPDEIQYPHMKFSEWKFKLFKVRSSVKpS-P-GEAQGPSKnTMEGQSSLEETPVVIcntNIPapEKPALVQPTFTANS 89   gray short-ta...
P15919         12 SSAPDEIQHPQIKFSEWKFKLFRVRSFEK-A-P-EEAQKEKD-SSEGKPYLEQSPVVP---EKPggQNSILTQRALKLHP 84   house mouse
NP_001243830   12 NSAPDEIQHPHIKFSEWKFKLFRVRSFEK-A-P-EEAQKE-KdSSEGKPSLEQSPAVL---DKAggQKPVLTQPAVKPHP 84   horse
XP_010709561    7 MDLPEEIQHPYAKFSEWKFKLFKVRPFQK-A-PsDKSQCINKdQEQEVASTDQNITLHkdeEVPrgEKLILTQMDFMGNT 84   turkey
XP_005802328   13 SFMPAELQHPHSKYSQWKFKLFRVKSMEK-A-P-LPSETQTEiGASLGISPPTAPNIEadhGg--gLASVMKLCLGGKSK 87   southern plat...
XP_003773737   12 SSAPDEIQHPYMKFSEWKFKLFKVRSFIK-P-PpEEAQGPNKnLGEGQASLEETPAVIssaNIPapEKPALIQPTFSALP 89   Tasmanian devil
XP_002199718    7 MDLPEELQHTYTKFSEWKFKLFKLRSFEK-T-PsDDSQHIHKdQAEEAVSSNKEIILHkdeAVPrgEKTELT-----GNR 79   zebra finch
XP_004070148   13 SVVPDELHPPHSEYSQWKFKLFRVKSMER-A-P-LPSKTQSEiGATLVISAPAVSDEEtglGEA--PASVMKLCFGGKSK 87   Japanese medaka
XP_540538      12 TSAPDEIQHPHIKFSEWKFKLFRVRSLEK-A-P-EEAQIEKKvSSEGKPSLEQSPAVP---DKAdgQEAALSPPALKAHP 85   dog
XP_003214699   12 cfvsEQTQLPYKKFAEWKFKLFKVRSIEK-PlP-DGSHLANNnKGKVAASLDQVIEEKt-dMVAlsHSPFETDTELNKSI 88   green anole
Q28463         90 KSLEK--P--ADIGKAGEKAIHQASLRQLCRICGASFRAdGQNRRYPVHGPVDSKTQGILRKKEKKVTSWPDLIAKVFKI 165  gray short-ta...
P15919         85 KFSKK--F--HADGKSSDKAVHQARLRHFCRICGNRFKSdGHSRRYPVHGPVDAKTQSLFRKKEKRVTSWPDLIARIFRI 160  house mouse
NP_001243830   85 KFLKK--S--HDDGKAREKAIHQASLRHLCRICGNSFKTdGHNRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRI 160  horse
XP_010709561   85 QALEK--N--VNDMKIQDNTVHQNNLKQLCRICGASFKTdCYKRTHPVHGPVDDETLCLLRKKEKKATSWPDLIAKVFKI 160  turkey
XP_005802328   88 ENVEGagK--RVDMKLQEMDTHMNHLRCLCRICGMVLRK-VKGPVHDVHGDLDDASKCVLRKMGCKFTSWPDILLKVFKV 164  southern plat...
XP_003773737   90 KSLEK--P--ADVGKTREKAIHLASLRQLCRICGVSFRAdGQNRRYPVHGPVDNKTQSLLRKKEKKVTSWPDLIAKVFKI 165  Tasmanian devil
XP_002199718   80 QGLEE--D--AHAMKTQDIRAHQNNLKQLCRICGVSFKTdCSQRTYPVHGPVDDETLCLLRKKEKTATSWPDLIAKVFKT 155  zebra finch
XP_004070148   88 ENVEG--PgrRVDMKLQEMDTHMNHLRCLCRICGMALRK-VKGPLHEVHGNLEETSKCALRKMGCKLTSWPQVLLNVFKV 164  Japanese medaka
XP_540538      86 KFLKE--P--HDDGKTRDKAIHQANLRHLCRICGNSLKTdRRNRRYPVHGPVDGKTQVLLRKKERRATSWPDLIAKVFRI 161  dog
XP_003214699   89 QTIDK--G--AFHVSQREAETHQENLQHLCRICGGSFKTdPYKRSHPVHGPIDDDMKALLRKKEKKATSWPDLLAKVLKI 164  green anole
Q28463        166 DVKGDNDSIHPTQFCHNCWNIMYGrfsnSPHEVYFPRNATIEWHPHTPSCDICQAA-----RWGLKRKGRQSNPS-LSKK 239  gray short-ta...
P15919        161 DVKADVDSIHPTEFCHDCWSIMHRkfssSHSQVYFPRKVTVEWHPHTPSCDICFTA-----HRGLKRKRHQPNVQ-LSKK 234  house mouse
NP_001243830  161 DVKADVDSIHPTEFCHNCWSIMHRkfssAPCEVYFPKNATMEWHPHTPSCDICHTA-----RQGLKRKSHQPNVQ-LSKK 234  horse
XP_010709561  161 DVRGDVDTIHPTRFCHNCWSIIHRkfsnTPCEVYFPRNSTMEWQPHSTNCEVCHTP-----RRGVKRKSQPPNVQ-HGKR 234  turkey
XP_005802328  165 DVTEDAESIHPLSFCHRCWLAAIR----GGGVCSFTRTKVPEWKPHTSHCYLCSPKkssfqRTGRKRRKVVPKVQsLAKR 240  southern plat...
XP_003773737  166 DVKGDVDSIHPTQFCHSCWNIMYGrfsnAPCEIHFPRKAAIEWRPHTPDCDSCQAA-----RRGLKRKGHQSNLL-LSKK 239  Tasmanian devil
XP_002199718  156 DVRGDVDTIHPTRFCHNCWSIIHRkfsnTLCEVYFPRNSTMEWQPHSPNCDVCHTT-----RRGVKRKSQPPSVQ-RGKR 229  zebra finch
XP_004070148  165 DVTEDAESIHPLFFCHRCCMVAIR----GGGVCSFTRTQISEWKPHSSHCHLCYPKklsfqRTGRKRRKVIPRAQsLAKR 240  Japanese medaka
XP_540538     162 DVKADVDSVHPTNFCHKCWKVMYRrfssAPRGVCFPRKAAPEWLPHAPSCDLCRAA-----RQGLKRKSPQPSAQ-LSKR 235  dog
XP_003214699  165 DVKGDIDTIHPTKFCHQCWTVIQKklsnSPYEIFFPKKGPMEWQPHSTSCDVCGTS-----PRGVKRKKQVLNPQ-LNKK 238  green anole
Q28463        240 LKAMADRARRARlpKS------------QAQ--PRKSSKDLMKKLTNCSKMHLSTKCLAVDYPVDFVKAI 295  gray short-tailed opossum
P15919        235 LKTVLNHARRDR--RK------------RTQ--ARVSSKEVLKKISNCSKIHLSTKLLAVDFPAHFVKSI 288  house mouse
NP_001243830  235 LKTAVDRARQARqhKR------------RAQ--ARISGKGVLKKITNCSKIHLSTKLLAVDFPAYFVKSI 290  horse
XP_010709561  235 VKITAERARVSRgiKN------------QVL----INNKNVMKEITNCKNRHLSTKLLAVDYPADFIKSI 288  turkey
XP_005802328  241 ARWDHGDTIAVGekRAlrpfgdlhspvlRAWkkNGIQREQWVKNITHCQNDHLNTKLIAEKLPTDFIISF 310  southern platyfish
XP_003773737  240 LKTVIKQTRRAHpsKS------------QVQ--PRNGGKDRMKKITNCSKMHLSTKLLAVDYPVDFVKAI 295  Tasmanian devil
XP_002199718  230 VKTTVERAQLNRgvKN------------QQLkqAQINNKNLMKEIVNCKDIHLSTKLLAVDYPVDFIKSI 287  zebra finch
XP_004070148  241 SRWDHSDSISLGerKAlsqygerqgpvlRAWkkAGLQREQWVRSITHCQKEHLSTKLISEKLPVDFIISL 310  Japanese medaka
XP_540538     236 LRTVLERAGRARghRR------------RARagLRDSGA--TGKASDCGNVHLGTELLAVDFPAHFVKSI 291  dog
XP_003214699  239 MRMMAGRARKIRqiRN------------TKQ----VNQKSLMKKIASCKKIHLSTKILAVDYPSDFVKSI 292  green anole
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