Conserved Protein Domain Family
ERbeta_N

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pfam12497: ERbeta_N (this model, PSSM-Id:289279 is obsolete and has been replaced by 463610)
Estrogen receptor beta
This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with pfam00104, pfam00105. There is a conserved IPS sequence motif. There are two completely conserved residues (Y and W) that may be functionally important. ERbeta binds estrogens with an affinity similar to that of ERalpha, and activates expression of reporter genes containing estrogen response elements in an estrogen-dependent manner. ERbeta acts as a transcription factor once bound to its ligand and it can dimerize with ERalpha.
Statistics
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PSSM-Id: 289279
Aligned: 19 rows
Threshold Bit Score: 131.015
Created: 15-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9XSW2        16 YNCSQSVLPLEPGPIYIPSSYVESCHEYSAMTFYSPA-VVNYSISS---NSEVGPGRQATSPNVLWPTPGHLSP-LAIHC 90  pig
Q9YH32        32 GSSSPGLSHETSQPICIRSPYTDLGHDFTTIPFYSPT-IFSYGGPS---ISECSSVHQSLSASLFWPSHGRVGTpITLHC 107 Nile tilapia
Q7ZU32        32 NSSSPS-LPVENHPICIPSPYTDLGHDFSTLPFYSPA-LLGYSTSP---LSDCSSVRQSLSPTLFWPPHSHVSS-LTLQQ 105 zebrafish
XP_010710318  40 YSCNQSALTTEHSPIYIPSSYVENRHEYSAMAFCSPA-MMNYNIASnfgDSESASVRQTSSPSVLWSAPGHLSP-LTLHC 117 turkey
XP_008124047  42 FSCSPSALTVEHSPIYIPSSYMENRHDYSAMAFYTPAaMMNYNIPGnfsDSESTALRQTASPSMLWSGPGHISP-LTLHC 120 green anole
ETE66045      40 FSCSQAALTVEHSPIYIPSCYMENRPDYSAMAFYSPS-MMNYNIPGnfsDSENATLRQATSPSMLWSSSGHISP-LTVHC 117 king cobra
XP_002200631  40 YNCNQSTLTAEHSPLYIPSSFMENRHEYSTMAFCSPA-MVNYNIGSnfgDAEGVTARQTSSPSALWAAPGHLSP-LSLHC 117 zebra finch
XP_005986456  40 YSGNLSTLPVEPRKICITSPYLENRHDFTTMAFYSPA-ILGYNVPAgvgESDNMAVSQSLSPTMLWPPAGHISP-MALHC 117 coelacanth
AAI71194      35 svpySGTVPMDQSPMYTPSSYLDSRHDYPSITFCSPS-LINYNVPGs--DSESSVLRQTVSPGLLWTSPDHMSP-VTLHC 110 western clawed ...
XP_007230994  32 NTSSSPVLPMESHPICIPSPYTDLGHDFTTLPFYSPT-LLGYSGTS---LSDCPSARQSLSPTLFWPSHNHVST-LSLHR 106 Mexican tetra
Q9XSW2        91 -QPSLLYAEPQKSPWcdtrslEHTLPVNRE 119 pig
Q9YH32       108 pQGRSQQGQSAQTPW------DSVITTSKS 131 Nile tilapia
Q7ZU32       106 -QSRLQQNHATSGTWtehtphDHVEEENSK 134 zebrafish
XP_010710318 118 -QSSLLYAEQPKSPWcevrplEPVLPITRE 146 turkey
XP_008124047 121 -QSSVLYAEQPKSPWcearpmDHVLPMHRE 149 green anole
ETE66045     118 -QSSVLYAEQPKSPWcearpvDHVLPIHRD 146 king cobra
XP_002200631 118 -QSSLLYPEQPKSLWcearpmEPVLPGSRE 146 zebra finch
XP_005986456 118 -QPSLMYAEPSKDPWsedrliEQNLSLNSr 146 coelacanth
AAI71194     111 -QSSLLYTEAPTSPWfeakseEHILPLSRE 139 western clawed frog
XP_007230994 107 pQTHTQHNQLSSGAWqelishDYIAEENSK 136 Mexican tetra
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