Conserved Protein Domain Family
Sox_N

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pfam12444: Sox_N (this model, PSSM-Id:289229 is obsolete and has been replaced by 463586)
Sox developmental protein N terminal
This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with pfam00505. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Statistics
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PSSM-Id: 289229
Aligned: 24 rows
Threshold Bit Score: 85.8646
Created: 22-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q70W02       115 SAVAVARAAATLLESKSseeenydeslmNTGSSARSASPGTNd------------DLSD---RDSNPEKDDM-------- 171 vase tunicate
XP_006002009  12 MSPTGSEEHHCLSPGPSa----------GVECESHRPNSTTGe------------E-GK---VKQEKD-SEE-------- 56  coelacanth
XP_001373727  21 TTSSMSHVEDSDSDTPLs----------PAGSEGLGCSSGTGprs--------agGGAA---LGSKVDPGEV-------- 71  gray short-tail...
EDL22429      18 TASSMSHVEDSDSDAPPs----------PAGSE--------Gl------------GRAG---GGGRGDTAEA-------- 56  house mouse
NP_990062     21 TTSSMSHV-DSDSDSPLs----------PAGSEGLGCAPAPAp------------RPPGaapLGAKVDAAEV-------- 69  chicken
XP_007556432  22 TNSSMSQDE-SDSDAPSs----------PTGSDGHGSL------------------LSG---LGKKLDSED--------- 60  Amazon molly
NP_001158342  22 TNSSMSQDE-SDSDAPSs----------PTGSDGHGSL------------------LAG---LSKKLDSED--------- 60  Japanese medaka
NP_001098555 100 PSPSMSEDSAGSPASPSg----------SGSD-TENTRPRENg------------LMRA---DGALSDFKKD-------- 145 Japanese medaka
XP_002932315  21 TASSMSHVSDSDSDSPLs----------PAGSEGRGSHRp---------------PGIS---QLSKRDGEET-------- 64  western clawed ...
XP_003224717  23 PSPALSDEEASSSGSPC-----------PSGSGSDAEGSGSSshggrpprlgdggAFAK---SGDAEMKKEAggvggggg 88  green anole
Q70W02       172 --SKD-----IKDAVSQVLKGYDWTLVPMPVR 196 vase tunicate
XP_006002009  57 --EDDrfpicIREAVSQVLSGYDWTLVPMPVR 86  coelacanth
XP_001373727  72 ---DDrfpacIRDAVSQVLKGYDWSLVPMPVR 100 gray short-tailed opossum
EDL22429      57 --ADErfpacIRDAVSQVLKGYDWSLVPMPVR 86  house mouse
NP_990062     70 ---DErfpacIRDAVSQVLKGYDWSLVPMPVR 98  chicken
XP_007556432  61 ---DErfpacIRDAVSQVLKGYDWSLVPMPVR 89  Amazon molly
NP_001158342  61 ---DErfpacIRDAVSQVLKGYDWSLVPMPVR 89  Japanese medaka
NP_001098555 146 --EDDkfpacIREAVSQVLKGYDWTLVPMPVR 175 Japanese medaka
XP_002932315  65 --MDErfpacIREAVSQVLKGYDWSLVPMPVR 94  western clawed frog
XP_003224717  89 ggEEDkfpvcIREAVSQVLKGYDWTLVPMPVR 120 green anole
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