3GFC


Conserved Protein Domain Family
CAF1C_H4-bd

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pfam12265: CAF1C_H4-bd (this model, PSSM-Id:289068 is obsolete and has been replaced by 463513)
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Histone-binding protein RBBP4 or subunit C of CAF1 complex
The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six.
Statistics
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PSSM-Id: 289068
Aligned: 264 rows
Threshold Bit Score: 49.8395
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GFC_A        19 EEYKIWKKNT------------PFLYDLVMTHALEWPSLTAQW----------------LPDvTRPEGKDFSihrLVL-- 68  human
Q386K4       141 CQKLDYSNKA---------------YDSFFQLRTEYPSLSFHVvreqesst-gggcttkYPl-sL----------TLVc- 192 Trypanosoma brucei
Q4DXX2       146 pqQLVYSNKA---------------YDSFFQLRTEYPSLSFDVlrdrdt-----anhskYPl-sL----------TLVc- 193 Trypanosoma cruzi
XP_002986241  20 DERRVWRPGVdpldegeelqyePSAYDTIHAFRLGWPCLSFDI----------------LRD-ELGALRHEFpltLFCta 82  Selaginella moe...
CCD77134      55 DEELVMDKRA---------------YRMFFELEVEFPSLSFDIltdnlgfd-rcvevngEAh-sV----------CLIs- 106 Schistosoma man...
GAA29130      67 DEQLVMDKSS---------------YRLFYDLQLEYASLSFDIlldnlgs--grevevnGPeisA----------SLLa- 118 Clonorchis sine...
CDJ01575      38 DEELVMDKSA---------------YRLYYHLQVEAPSLSFEPlldclgdsrevemngvDPl-tI----------YLAa- 90  Echinococcus mu...
XP_007410106  85 GEELVADPTA---------------YKMLHPLTMAWPALSFDVlrddlg-----eermrMPh-sV----------CVVa- 132 Melampsora lari...
XP_001418159  30 DVELEYDESA---------------YDALHAFSHEWPCLSLDVmrddlg-----egrevFPh-eM----------TIVt- 77  Ostreococcus lu...
XP_001567987 145 pMKLEFSNKA---------------YDAFFQLRTEYPCLSFDVvkdnk------enhtkYPl-sT----------VLVc- 191 Leishmania braz...
3GFC_A        69 GTHTSD----EQNHLVIASVQLP 87  human
Q386K4       193 GSQAEEs---SKNQLYILRVTNI 212 Trypanosoma brucei
Q4DXX2       194 GSQADEl---SKNQLYVLRIQNI 213 Trypanosoma cruzi
XP_002986241  83 GTQAANp---ADNRLIVAKLTNi 102 Selaginella moellendorffii
CCD77134     107 GTEAPKd---NQNKLIVMRLSNM 126 Schistosoma mansoni
GAA29130     119 GTQAAPg---TGDALVVLRMSNM 138 Clonorchis sinensis
CDJ01575      91 GTQAQEe---KDNGIIVMRLSNM 110 Echinococcus multilocularis
XP_007410106 133 GTQADAtgdvDQDEIMIMKWDGL 155 Melampsora larici-populina 98AG31
XP_001418159  78 GTQAMEa---TKNVLSVIRVSRI 97  Ostreococcus lucimarinus CCE9901
XP_001567987 192 GTQADEq---ARNELLVLYVTNM 211 Leishmania braziliensis MHOM/BR/75/M2904
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