1VYV


Conserved Protein Domain Family
VGCC_beta4Aa_N
?
pfam12052: VGCC_beta4Aa_N (this model, PSSM-Id:288872 is obsolete and has been replaced by 463445)
Click on image for an interactive view with Cn3D
Voltage gated calcium channel subunit beta domain 4Aa N terminal
The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins.
Links
?
Statistics
?
PSSM-Id: 288872
Aligned: 15 rows
Threshold Bit Score: 60.5763
Created: 14-Jul-2015
Updated: 5-Aug-2015
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
1VYV_A         1 GSADSYTSRPSdSDV-SLEEDREAIRQEREQQAAIQLERAKSK 42  Norway rat
XP_009907741 146 GSADSYTSRPSdSDV-SLEEDREAIRQEREQQAAIQLERAKSK 187 downy woodpecker
XP_009017056  15 GSFESNCSQNS-SNL-SLEEEQESIRKNAEKLAQTMLEKARTK 55  Helobdella robusta
CAF93659       2 GSADSYTSRPSdSDL-SAEEDREACRREAERQAQLQLDRAKSK 43  spotted green pufferfish
XP_008194393  36 GSADSNYSQPS-SDL-SLDEEKETLRREKERQALSQLEKARTK 76  red flour beetle
XP_011564071  14 GSADSNYSQPS-SEL-SLDEDKEALRREKEAQALSQLDKARSK 54  diamondback moth
XP_002411868   9 GSADSNYSQPS-SDL-SLDEDRENTRRETERLALAKLQSAREK 49  black-legged tick
XP_002598413  28 GSAESYNSRPSeSDIsSQDEDREALRRESEKQALTQLEKARTK 70  Florida lancelet
AAC19386      50 GSAESYTSRPSdSDV-SLEEDREALRKEAERQALAQLEKAKTK 91  house mouse
XP_005167894  16 GSADSYTSRPSdSDV-SLDEE-QGGRQEKEQQATVQLERAKAK 56  zebrafish
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap