Conserved Protein Domain Family
Proteasom_PSMB

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pfam10508: Proteasom_PSMB (this model, PSSM-Id:287479 is obsolete and has been replaced by 463124)
Proteasome non-ATPase 26S subunit
The 26S proteasome, a eukaryotic ATP-dependent, dumb-bell shaped, protease complex with a molecular mass of approx 20kDa consists of a central 20S proteasome,functioning as a catalytic machine, and two large V-shaped terminal modules, having possible regulatory roles,composed of multiple subunits of 25- 110 kDa attached to the central portion in opposite orientations. It is responsible for degradation of abnormal intracellular proteins, including oxidatively damaged proteins, and may play a role as a component of a cellular anti-oxidative system. Expression of catalytic core subunits including PSMB5 and peptidase activities of the proteasome were elevated following incubation with 3-methylcholanthrene. The 20S proteasome comprises a cylindrical stack of four rings, two outer rings formed by seven alpha-subunits (alpha1-alpha7) and two inner rings of seven beta-subunits (beta1-beta7). Two outer rings of alpha subunits maintain structure, while the central beta rings contain the proteolytic active core subunits beta1 (PSMB6), beta2 (PSMB7), and beta5 (PSMB5). Expression of PSMB5 can be altered by chemical reactants, such as 3-methylcholanthrene.
Statistics
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PSSM-Id: 287479
Aligned: 8 rows
Threshold Bit Score: 491.177
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5CF75         5 LDNDLKKKLQVFLAS--PLCKESYNELSNAISIIGlLELL-----------------LN--SN----TMDDITLITEVLK 59  Cryptosporidium...
Q16401         1 MAAQALALLREVARL--EAPLEELRALHSVLQAVP-LNELrqqaaelr--lgplfslLN--EN----HREKTTLCVSILE 69  human
Q16R63         2 DENLCQELLANLQLE--QTRKTALTEIKNTLISSSnASAIsnsflks----pellncLE--DA----NSEQTLLACDILS 69  yellow fever mo...
Q9VYG1         4 EDNWWVTKLKALESK--PQRLDALTAMNSAIAKEA---ALprqiierllttdqlydcANpaADshvpKDQAVDVTLELLC 78  fruit fly
Q20058        11 IEEWRNDYIAERSSKkgWEILEKLAKMQIEAAQQMeTEDDvaaa---------dfddFS--TS-------------KLVK 66  Caenorhabditis ...
XP_001626658   2 AAEKCKELVENISNAsgDEIVAFLRDLSVLISSSPnIRDLaslips-----erlfncLR--TT----NTDQITYCKNILK 70  starlet sea ane...
CAG12429       1 MAATIESLLEEISGV--EHPTEELQLLKTALLAIP-VSALrdsvsgqr--fnvifalLN--SD----RREQVELCVDILE 69  spotted green p...
XP_002642096  11 IEGWRNDYVSNRNSKkgWEILENLVKMQTEGNQQMeTDEMsenca--------afddFS--TN-------------QLIK 67  Caenorhabditis ...
Q5CF75        60 RLTILGVLDDAifdIPNAIEMLEKGSKSQTECIRLLVAF-----ILNSLSMNELKCKKACEKGFFSVLGLLLRDIDISIG 134 Cryptosporidium...
Q16401        70 RLLQAMEPVHV---ARNLRVDLQRGLIHPDDSVKILTLSq----IGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVA 142 human
Q16R63        70 ICMSTLAIDE----SSEVKNVIEKSLSHVNPRVQAFGLRe----LRRIVQSRSA--DGFVNETLILLVIKCLASDDTSVG 139 yellow fever mo...
Q9VYG1        79 HCLDQLAMDTA---DEQLSSLLRRGLTHSNPALRAQVLAslfkkLLR--QLTVGQVLTLPNNELIFLILDELKQPDTQST 153 fruit fly
Q20058        67 LIIGDISTKDL---LVDHQIILLEFIPSAHPNILRH--------VVRTVREKEGAISLLKSSSVAIGVAFARRVTDAEAG 135 Caenorhabditis ...
XP_001626658  71 NILKFEKPDAP---ATKYHDAVIEGLNHPTEDVRELCLIe----LERCSGTVNGVLALMDKEDLLSYIARGMADEHLKNA 143 starlet sea ane...
CAG12429      70 RILVALSPVCL---VQNYRAELQAGLGHPQDTVKVLALTq----IGRIVEHPDAATEVLNNREVLQAVINCIREEKIAVA 142 spotted green p...
XP_002642096  68 LIIGDFTVKDL---LVDHQVVLLEFIPSAHPNILRHVA--------RIIREKEGALPFLKTESIAVGIAFARRITDSDAG 136 Caenorhabditis ...
Q5CF75       135 ESASKTLKSISKSNPEF--VYDQNLINKLLENFKSlK-DETRLRIIDTYISIGSVSEDLFNKCQEKGeFYSLALKEYFT- 210 Cryptosporidium...
Q16401       143 KAAIKSLSRISLTQAGLeaLFESNLLDDLKSVMKT-N-DIVRYRVYELIIEISSVSPESLNYCTTSG-LVTQLLRELTG- 218 human
Q16R63       140 TPAIELLRLMLPRFVQLrsV-----SENLEGLLDK-G-DVVRCRLYELAVRLAKQSEELLAAMDK---FLKKAVQELDG- 208 yellow fever mo...
Q9VYG1       154 SLAINILSIVLPQRISNadV-----QAKLVQLLKQ-N-EIVRCRAYELAVVLAKKSATLLSDVTF---ILDAALSELDN- 222 fruit fly
Q20058       136 EEVGRLMAHLVDHDLINeeL-----KSQLSVANGReS-SSIRSRIYSIATERARISSNTSCIHW----LYDKILKSVLDt 205 Caenorhabditis ...
XP_001626658 144 QIASNVFTNLAKHEAGLkvLFDSHLQSEFNALLKT-K-DTVRMRVYDMYITVQAHSPKAFDVCKESG-IFEKLISELDG- 219 starlet sea ane...
CAG12429     143 KQAIQSLSKLSHSKPGLdaLFQSDLLTVMKDVMAT-S-DIVRYRIYELVVEISSASPVSLGYCANSS-FISQLLGELTG- 218 spotted green p...
XP_002642096 137 EEIGRLLAHLVDNEKICdeL-----KFILKNNTGR-NnAMNRASIFSIATERAGISADASCIRW----LYEEILKVVLDk 206 Caenorhabditis ...
Q5CF75       211 EDILLKLVSMKLLEDLGE-YNWGVKFIINNSTPELLIDDLNNPMFDDeikISIVYLLSKMvnnnpELSQKILTM-SNNSF 288 Cryptosporidium...
Q16401       219 EDVLVRATCIEMVTSLAY-THHGRQYLAQEGVIDQISNIIVGADSDP---FSSFYLPGFV-----KFFGNLAVMdSPQQI 289 human
Q16R63       209 EDVLLQLNVLQILSELSE-GNHGMAYLENNGVFDKLMVKIQGLGEDP---LGTILIPGLM-----KFYGGVAAI-HPAKV 278 yellow fever mo...
Q9VYG1       223 DDVLLQASVMELLVPLAE-QNHGLSYMERRRVLDIISYRVQRVEEHP---LDALLVPSIM-----KFFGKISVY-QPLKI 292 fruit fly
Q20058       206 QDVLAQLDALDTFVDIALsGKQNAEALYELGIVKKIYELMEWSKESPd--GGEMYLYGT------RFMCYMAR--SYPQV 275 Caenorhabditis ...
XP_001626658 220 RDVLVQMNCLELLTKLASiSPSGLEYLDQKGVVTKLNNLLLEVETDP---LITLIIPGII-----KFFGTLATA-HPLET 290 starlet sea ane...
CAG12429     219 DDVLVRATAIEMVTTLAR-SQHGRQYLAQQGIMDKIANMIRGAETDP---FSSLYLPGLV-----KFFGNLAIMdSPQQV 289 spotted green p...
XP_002642096 207 EDMLAQLDAINIFGDIALsGKQNAEKMIEWNIVEKISELMERSRQNPd--HGEMHLYGT------RFFCYLAR--SCPQV 276 Caenorhabditis ...
Q5CF75       289 IQTFKEFMGSYN---SISCSEDYLKSVCAINCWGLFASNLISFQNLm--NVWEDSFHLMLKLVSNSKSEIS-------LS 356 Cryptosporidium...
Q16401       290 CERYPIFVEKVF---EMIESQDPTMIGVAVDTVGILGSNVEGKQVL---QKTGTRFERLLMRIGHQSKNAPvelkircLD 363 human
Q16R63       279 YDGYPKVIEMLF---DCLASEDMTILPTAYDTLGCIAAANEGKRQLh--YKHGAALKKTLQHFSKVIRNLPndlkirlLG 353 yellow fever mo...
Q9VYG1       293 IGGYPHMLACLF---MQLQSEDESILPTAMDTLANLATTPQGKILLn--MHFSGAMEKSFKKYGSHTKKLSahikkrlLN 367 fruit fly
Q20058       276 LKYFPDLARRLMleiRMFDQLSVVSRLGAFDHFASMCFSVEAKETLedmFKDSKDLENTLGAAGAACTMGTmelkcrtLQ 355 Caenorhabditis ...
XP_001626658 291 TQQYPQFLEQTY---SMISCGDPTLMPIAMETIGVIAHSEDGLRAV---FNNQGRNKHIMKTIFGHATSSQvdlrkraLE 364 starlet sea ane...
CAG12429     290 CESYPAFQHKVF---EMALDPDPVMNGVALDTLGLLGSTVEGKQVL---QKT---------------------------- 335 spotted green p...
XP_002642096 277 LKTFPDFVNRLMfeiRIFNDLGITDRLAAFDHFGCLCYSVEAKEMLedmFKNTNTLDSTLAAAGAAFAMGSiemkrctIQ 356 Caenorhabditis ...
Q5CF75       357 SLNSWVTFFESKDINQILNQTKTTFGLKQSIETQllpiIISDLISKPFPENRTLIYRILTLMIPYFSNITSnLISNSKIR 436 Cryptosporidium...
Q16401       364 AISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLE----LFRGISSQPFPELHCAALKVFTAIANQPWAQKL-MFNSPGFV 438 human
Q16R63       354 CLRSM--FAVDSADNQISSITQEWYGNLAEQENLn---LVMDYIKNPFPDMKRAALGLLKAIVGHRWGQTY-LLNTGGFV 427 yellow fever mo...
Q9VYG1       368 SLDVIYDFKTPPATEII-NIGKNWYECFAGGAHAn---IIMDLINTPFPDLQMAALSFLKTICKYNWGIVA-LKNTGGAV 442 fruit fly
Q20058       356 AVTLLFQNTTE-------KIAETWYERLGGKALTh---VAVGNVKKPFPEMKNCIYDFWQQLFTYPSVVHQ-FITFQGFI 424 Caenorhabditis ...
XP_001626658 365 ALASIFYSEQLTPSEELCEFAKVLYKNMAAAPLE----AIFTVAKQPFEELRCSALCLLRSLARYQWALQD-MINCPGFL 439 starlet sea ane...
CAG12429     336 ----------EQQTEDLLALTESWFHLLSKQPMD----MIRNISSQPFPELHCGALRIFTAIAAQPWGQKL-MVSTPSFM 400 spotted green p...
XP_002642096 357 AITLIFENATD-------AMASSWYGLMGDKALTq---VALDNVKKPFPELKNCIYDFWQQVFKYPTLVQK-FIAFPGFI 425 Caenorhabditis ...
Q5CF75       437 DILLNPNSDSNKDILYIKYDLVKQMVKYD--Qn---TISNIPDPNFSsSLQEYVKVGPFYKSSSAEMQIQ----D 502 Cryptosporidium hominis
Q16401       439 EYVVDRSVEHDKASKDAKYELVKALANSK--T----IAEIFGNPNYL-RLRTYLSEGPYYVKPVSTTAVEg--aE 504 human
Q16R63       428 EYLLDRKQEADKDVVLDKYEVIRVLA----------ASTVFDEQTAS-ELRRYVAEGAFYVQGITEVAIEg--aS 489 yellow fever mosquito
Q9VYG1       443 EFLLSRQKDLHRDIKYMKWQIMEILS----------ASAEFSPTETI-RFTAYVNEGPYHVQADLDVATEpqgnA 506 fruit fly
Q20058       425 DWALDDKSEDNPEYEIRKRQIIHRIIELS--EntksAEVLKADPELIgRLKKYLQ---------PAVAPAprveE 488 Caenorhabditis elegans
XP_001626658 440 EYLLDRRTEFEKSGKEHKYDLIKELVHFP--P----AKQIFDRPYFL-RLQEYEREGPFFARAEAAVAFEg--aD 505 starlet sea anemone
CAG12429     401 EFVLDRSTGQTKEAKDAKFELVGSLVSSS--T----AASILGSQHYI-SLKAYLREGPYYVSAVASVSTEg--aE 466 spotted green puffer...
XP_002642096 426 NWSLDEKSENAPEYEMRKRQVIRRVIDLSekE----SNILNADAELIgRLKKYLQ---------PSAAPApriee 487 Caenorhabditis briggsae
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