1J2F


Conserved Protein Domain Family
IRF-3

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pfam10401: IRF-3 (this model, PSSM-Id:287386 is obsolete and has been replaced by 463076)
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Interferon-regulatory factor 3
This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.
Statistics
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PSSM-Id: 287386
Aligned: 31 rows
Threshold Bit Score: 164.337
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1J2F_A        33 WEFEVTAFYRGRQVF-QQTISCPEGLRLVGSEVGDRTL----------------PGWPVTLPDPGMsLTDRGvMSYVRHV 95  human
Q5XIB0       197 WEFEVTAFYRGRQVF-QQTLFCPGGLRLVGSTSDNGTL----------------PWQPVTLPDPEEfLTDRLvREYVRQV 259 Norway rat
Q4H3B1       348 RQYSLRVKYQQHEVLeRDLMEMNLGYRIHYGDPDQQCYlmkidepqrselivdfERPAISLPQVKT-IGGKG-TNGFQKV 425 vase tunicate
Q4JF28       198 WEFEVTAFYRGCQVF-QQTVFCPGGLRLVGSEAGDRML----------------PGQPIRLPDPATsLTDKSvTDYVQRV 260 cattle
Q90643       284 PLLDITIYYRGKMVY-QEQVDDSR-CVLAYQPLDPAVA----------------EQRLVLFPSPAS-LPDPRqRRYTEDL 344 chicken
Q3SWU2       239 GSLDVTIMYKGRTVL-QAMVGHPR-CVFLYSPVGSAIRt--------------sEPQPVIFPSPAE-LPDQKqLHYTETL 301 Norway rat
XP_004913664 196 SQMLIQFYYSGKLVD-HVTTTRMDGCRISVAQHLTGGEn----------------fENIRFPTAEF-ITSERqRQITKKL 257 western clawed ...
CAG02387     254 CDLEISIHYRKKEML-KTTVRAPR-LQLHYHSEAPELE----------------ANHHICFPPTDG-LLDHKqVEYTNRI 314 spotted green p...
NP_956971    216 CDLEISINYRRTEVL-KTRLCSSL-IHFFYQCDPSELR-----------------GEQIRFPTTEC-LIDVKqIQYTKRI 275 zebrafish
XP_005652817 270 eaLDLTIMYKGRTVL-QEMVGGPS-CVLLYGSPGPAGAaa--------------epQQVAFPSPAE-LPDQKqLHYTEKL 332 pig
1J2F_A        96 LSCLGGGLALWRAGQ-WLWAQRLGHCHTYWAVSEELLPN-SghgP----Dg-EVPKDKEGGVFDLGPFIVDLITFT-E-G 166 human
Q5XIB0       260 LKGLGKGLVLWRAGQ-CLWAQRLGHSHSFWALGEELLPD-SgrgP----Dg-EVPKDKNGVVFDLRPFVADLIAFM-E-G 330 Norway rat
Q4H3B1       426 LKNTDAGLVFTQDEDhNLFCKRLCQSRVFAFSRYGEDND-Dk-hP----I--KLEREATVLLFNLNLFITDWINCL-KtS 496 vase tunicate
Q4JF28       261 LSCLGGGLALWRAGQ-WLCAQRLGHCHVYWAIGEELLPS-CghkP----Dg-EVPKDREGGVFNLGPFITDLITFI-E-G 331 cattle
Q90643       345 LEV--AGLRLEQRAG-QLLATRLKKCKVFWALSQQLEGGe---pP----Ln-LLHRDQETTIFDFRVFCTELRDFR-DsR 412 chicken
Q3SWU2       302 LQHVSPGLQLELRGP-SLWALRMGKCKVYWEVGSPMGST-NpstP----Aq-LLERNCHTPIFDFSTFFRELEEFR-ArR 373 Norway rat
XP_004913664 258 FGHLEKGVLLFSNKQ-GIYIKRLCQGRVFWSGNCMQYKD-R---P----T--KLERDEMVKIFDTNQYIRELQLCY-S-N 324 western clawed ...
CAG02387     315 LNSIQKGLLLEVRDT-GIYATRQDRCHVFASTSDPSTAHlE---P----S--KLPQNNMVELLSFAKYVHELKLFR-E-N 382 spotted green p...
NP_956971    276 LDSIQRGLQLEVNQY-GIYGFRQDKCKVFVSTSDPCEIQ-K---P----EprKLQQNYKEQLLSFDKYIRDLLDFK-E-N 344 zebrafish
XP_005652817 333 LQHVAPGLQLEFRGP-KLWARRLGKCKVYWEVGGPLGSG-S---PstpaC--LLPRDCDTPIFDFGTFFQELMEFRaR-R 404 pig
1J2F_A       167 SGRSPRY-ALWFCVGESWpqDQPWTKRLVMVKVVPTCLRALVEMAR 211 human
Q5XIB0       331 SRHSPRY-TLWFCVGESWpqDQPWVKRLVMVKVVPTCLKELLEMAR 375 Norway rat
Q4H3B1       497 RKREAIDhSIHLSLGKKP--ETRRCKTFIGLKLIPKVAETLLALLT 540 vase tunicate
Q4JF28       332 SRRSPLY-TLWFCVGQSWpqDQPWIKRLVMVKVVPMCLRVLVDIAR 376 cattle
Q90643       413 RERSPDF-TIFLCFGQCFssTKPKESKLILVKLVPQFCEYWYEQVQ 457 chicken
Q3SWU2       374 RQGSPHY-TIYLGFGQDLsaGRPKEKSLILVKLEPWLCKTHLEGVQ 418 Norway rat
XP_004913664 325 QGRIPES-KVTLCFGEEFpdATPVHLKLIIVQIEQLGLRQLTDDAa 369 western clawed frog
CAG02387     383 NGGSPEY-TINMCFGEKFpdGKALEKKLVTVKVVPLVCRHFYEMAH 427 spotted green pufferfish
NP_956971    345 RGGSPDY-TIYLCFGEKLhdGKPLEKKLITVKVVPLICRELHERAQ 389 zebrafish
XP_005652817 405 RQGSPHY-TIYLGFGQDLsvGRPKEKSLVLVKLEPWLCRTQLESVQ 449 pig
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