2V1U,2QBY,1FNN


Conserved Protein Domain Family
Cdc6_C

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pfam09079: Cdc6_C (this model, PSSM-Id:286205 is obsolete and has been replaced by 462672)
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CDC6, C terminal
The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localization factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity.
Statistics
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PSSM-Id: 286205
Aligned: 208 rows
Threshold Bit Score: 39.4591
Created: 13-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2V1U_A       296 LLSIMML-E--DGGR--PASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRG-R-Y-GK-TREVSL 366 Aeropyrum pernix
WP_012945015 314 LLALTELsVn-SDED--AFLTSRVYDQYERICEHLDMDILSVRRFRDILKEQAFLGVVEIEKINKG-SaG-GI-HLQNRL 387 Haloterrigena t...
WP_004056442 316 LYSLVLQtGg-RKTA--EITTNKIYRQYLTVADDLDMDQLSERRVQELLQELDFLNVIQSEVRGRG-R-GqGV-HGTHRL 389 Haloferax medit...
WP_006053484 318 LYALVLQtEg-DQGA--KVTTSNVYRQYLSIANSLDMDQLSERRVQEILKELDFLNVIQSEVKGRG-R-GqGI-HGRHRL 391 Halogeometricum...
WP_012660220 339 LRSLALLtKn-HEQEknQFKTSEIYDFYKQICKKEGSDPLSLNRARRHLKEQAFLELTEIEHASEG-R-E-GA-FLLHRL 413 Halorubrum lacu...
WP_004059549 309 LRALALLtLn-SDDQ--QFSTSDIHRLYERLAEKEGSDPLSHDRVYRLLKEQSFLGITESYHTGGGaS-K-GA-FLQHRL 382 Haloferax medit...
WP_005553458 311 LYALASCiVt-GDRE--TYKTREIYERYADICELVATDPITENGLYRQLKEQAFLGVIESEKTGGG-RsQ-GS-YLLHRL 384 Natronococcus a...
WP_012943595 324 LYALAYLtKs-KLSD--SFSTGEVYDTYCVVADVVAGESLTHQRVLDLMKKWTLPEITESRHTGGG-K-GqGS-YRTHRL 397 Haloterrigena t...
WP_013880859 312 LYALTLLtEn-SSEK--EFPTKIIYNQYKEIARQLDFDVLSERRVQEILQEQNFLNVIQSEREGRG-R-G-RGaHAKHRL 385 Halopiger xanad...
WP_004043172 199 LYSLALLtEesSNED--EFSTSRIYKRYQNTAETVDAKVLSEHRVYELLKEQAFLGVVESTRTGGG-RgE-GS-YLEHRL 273 Haloferax volcanii
2V1U_A       367 DADR 370 Aeropyrum pernix
WP_012945015 388 IEDP 391 Haloterrigena turkmenica
WP_004056442 390 LEDP 393 Haloferax mediterranei
WP_006053484 392 LEEP 395 Halogeometricum borinquense
WP_012660220 414 MAEP 417 Halorubrum lacusprofundi
WP_004059549 383 MKDP 386 Haloferax mediterranei
WP_005553458 385 VTDP 388 Natronococcus amylolyticus
WP_012943595 398 LHDP 401 Haloterrigena turkmenica
WP_013880859 386 LENP 389 Halopiger xanaduensis
WP_004043172 274 VQDT 277 Haloferax volcanii
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