4JHS


Conserved Protein Domain Family
Sushi_2
?
pfam09014: Sushi_2 (this model, PSSM-Id:286149 is obsolete and has been replaced by 430371)
Click on image for an interactive view with Cn3D
Beta-2-glycoprotein-1 fifth domain
The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.
Links
?
Statistics
?
PSSM-Id: 286149
Aligned: 23 rows
Threshold Bit Score: 111.26
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
4JHS_A        96 KASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCK--NKEKKCSYTEDAQCIDGTIEVPKCFKehs---slAFW 170 human
XP_004066257 263 RAPCTVGIKRGRIFYNARKIWIEDLKPNRVLHGEIVVFFCL--NRDEKCGYPVSSTCNDGTLPIPECFEepgkveynLKS 340 Japanese medaka
XP_005807939 261 RAPCEVGIKRGRIFYNARKIWIEDLRPNRVLHGEHVAFYCK--DKAEKCGYPVASTCNDGNLPIPDCYEqpgkieynLRS 338 southern platyfish
XP_003978255 263 RAPCTVGIKRGRIFYNSQKLWIADLKPNRVLHGEHVAFYCL--NKADRCGYPVASTCRDGNLPIPECFEepgkieynIRA 340 torafugu
XP_006635542 264 RASCIIDIRRGRIFYSSKKIWIEDLPEKRVQHSEHVAFYCK--NEEKKCGYPVVTQCVDGTLNIPECFKepgaveykLNY 341 spotted gar
XP_005807940 261 KAPCSVNIQRARILHNGKKIWMENFEPNRVLHLDIVSVYCM--NQAMKCGYAVPTQCIDGTLNIPECFEepsaleytLKP 338 southern platyfish
XP_003458364 263 KAPCKIGIDRGRILYKGKKMWIGDFNPNKVLHKDIVSVWCM--NNARKCGYSVSTQCIDGRLVIPECYEepsgvnynLYA 340 Nile tilapia
XP_005992224 269 KASCIIPIKRGRIYYNAEKIWIEKLPEKRVQHAEEVAFYCK--NKEKKCGYPVLAQCINGTIEVPSCFKepgrveyqIHS 346 coelacanth
XP_003225895 263 RARCPISAQRSRVIYNGRKLWINEIPAGLVHHGETVKFFCR--SQNKTCSFEAESQCFDGVLKTPDCYDeptylqyhLFP 340 green anole
XP_006012854 149 RSRCKIPVKRSRFIYYDSKVWVQEVVDGVVQHLDTVSFYCRlsGADFTCSYTVQSQCFDGTLPLPDCYEgm--------- 219 coelacanth

4JHS_A       171 KTDASDVKPC 180 human
XP_004066257 341 KSLPSEIRMC 350 Japanese medaka
XP_005807939 339 KNLPSEIRAC 348 southern platyfish
XP_003978255 341 KTLPSEIEMC 350 torafugu
XP_006635542 342 KSLPSEIKMC 351 spotted gar
XP_005807940 339 NSLPSEIDQC 348 southern platyfish
XP_003458364 341 GSLPSEIQQC 350 Nile tilapia
XP_005992224 347 SSLPSEIKQC 356 coelacanth
XP_003225895 341 KRVVSEIPAC 350 green anole
XP_006012854     ----------     coelacanth
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap