Conserved Protein Domain Family
RFC1

?
pfam08519: RFC1 (this model, PSSM-Id:285691 is obsolete and has been replaced by 462507)
Replication factor RFC1 C terminal domain
This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyze ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo.
Statistics
?
PSSM-Id: 285691
Aligned: 166 rows
Threshold Bit Score: 81.0521
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q22DN2        853 IAQSDLLSKSIRq-SGNWSLLPNFAFTSCIYPcdkv------cedKPIYPrfpEWLGKFQTTKKTTRELREFRVSLSKSI 925  Tetrahymena t...
Q8SRT8        389 ISLGDVVEKLIRgvSQDWSLAPLHAVYSVVVPtkgr-----hlmkKLEFP---SWLGQNSKHSKAERILHTVSMHSSCKI 460  Encephalitozo...
A8AC24        291 VSRADVIYGRIRr-TMNWSLLPY--FFNALGPgvalaktkyhkraRWSYPekiVLLAR---TKEERRVRDELASHLALLT 364  Ignicoccus ho...
XP_002780231  610 MSEADMISTAVRs-GQEWTLLPSHCVLSTVGPsfycn----nfigFPEFP---QWLGANSTTTKNARLVRELRGMLSQTT 681  Perkinsus mar...
XP_007604785  386 ISMSDIIDSRIHgtEQEWSLMPYHAFFSCVYPlhgr-----lmhkRLDFP---LYLGQYSKFGKNNRLLTEICYHFRPKV 457  Vittaforma co...
XP_002995454  418 ISSGDVVEKLIRgsTQEWSLLPLHGFFTVVLPtkdk-----alfkGIDFP---SWLGQNSRYLKHQRIIKEVKRHVSKYV 489  Nosema cerana...
XP_011132856  193 VAFGDVVGAKLRe-RNQWDLLPDVGMFSTVLPamlan---pgrtpRMEFP---RLLGKISARNKKKRCA------AAIKN 259  Gregarina nip...
EPR79382      385 ISMGDIVDGIRRt-TMDWSLLPLHGFFSTALPtqt-------vlkKIEFT---KFLGKLSSTNKNKRVINKIFHHLFKVN 453  Spraguea loph...
XP_001300705  436 MAIGDVLNNDIYq-NMEFQTLPAHGFFSAVAPsilspg--kdwggMAKFP---MYFGKNSRHKKLERYINEMGRRISRTT 509  Trichomonas v...
ELQ75739      326 ISLADTYLRKMg--SNDWSLLNQYAVFGALIPaqni-----kinrRIEFP---KILGNTSKGNKHNKIIQTFHFHILSR- 394  Trachipleisto...
Q22DN2        926 SGSRFAVKFD-YVPFLLKI-ILSH---------L--KK---G---KnsdIETVLDYL--EYYNIK-PQHlK-EHLNDLQY 982  Tetrahymena t...
Q8SRT8        461 RNNPEELRKC-SSGLILQK-YAYY---------L--KTh---------sIDKAISNI--VDYDMT-KED-I-VGLAEII- 512  Encephalitozo...
A8AC24        365 HSSKSYVRRE-IIPMLQFIaQVNPnyfarlalgL--RL-----------SDPMIKYLakSKYQLV-KKY-V-EELKSSRT 427  Ignicoccus ho...
XP_002780231  682 SMSARDLRTSgYMDLLYDS-ILQP---------L--KNgkeDthaS---VASCIQLL--DQLGVS-KDG-VlECLTDLRL 742  Perkinsus mar...
XP_007604785  458 --TRKSFRLF-VGELIFKR-FTNG---------L--QE---G---N---IGQSIKVL--ESTDLL-KED-A-INLGELIg 508  Vittaforma co...
XP_002995454  490 NSGLENFRLY-DSYIIFLE-ILNF---------L--KE---N---N---VKSAIDLL--KEYDLI-KDD-F-VNLSELLL 542  Nosema cerana...
XP_011132856  260 CVGYHGCLEDgYFELLNEY-ICQP---------LgeANrneA---A---FQTMMERA--VTYRLTdKELaI-EGLETLRM 320  Gregarina nip...
EPR79382      454 NSSIEETMLY-YFPVLNQY-YITQ---------M--THgdtE---D---I---INLL--LKNFLL-KED-L-DEIYTLFR 506  Spraguea loph...
XP_001300705  510 NLPTSEINDT-TVPLLLMR-AKNY---------L--SGr-kP---N---IDGFLDML--DSFEMT-LDD-Y-EHLGELYT 564  Trichomonas v...
ELQ75739      395 -CDPTEFYFY-DMPLLIKT-YIAN---------L--NDg---------hIDKNVQFL--VENKLL-KSD-C-DDGMSVYG 446  Trachipleisto...
Q22DN2        983 PKNdYY-G------VVSSDIKTKLTKEYNK 1005 Tetrahymena thermophila SB210
Q8SRT8        513 -----P-GgadlfkGIERKVKLLLDREYKK 536  Encephalitozoon cuniculi
A8AC24        428 V-------------KAEEQTKAKEVVKELK 444  Ignicoccus hospitalis KIN4/I
XP_002780231  743 -----P-TqpdeykTIDAKTKSALTRSYNK 766  Perkinsus marinus ATCC 50983
XP_007604785  509 sn---------syqSISAKYKMALTREYNK 529  Vittaforma corneae ATCC 50505
XP_002995454  543 -------DgqalykEVKTKTKGDFTRQYNK 565  Nosema ceranae BRL01
XP_011132856  321 PLT-PQrThthpydKLDTATKTKATKCFNd 349  Gregarina niphandrodes
EPR79382      507 St-----------iKFDSKIKSKLTREYKK 525  Spraguea lophii 42_110
XP_001300705  565 Y-G-PP-AmaakslPGTPAVKGAVTRGYRQ 591  Trichomonas vaginalis G3
ELQ75739      447 WEk-----------NVSTKGKSAMTRAYKK 465  Trachipleistophora hominis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap