1VCS,2V8S


Conserved Protein Domain Family
V-SNARE

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pfam05008: V-SNARE (this model, PSSM-Id:282816 is obsolete and has been replaced by 461516)
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Vesicle transport v-SNARE protein N-terminus
V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this. This domain is the N-terminal half of the V-Snare proteins.
Statistics
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PSSM-Id: 282816
Aligned: 81 rows
Threshold Bit Score: 29.8663
Created: 15-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VCS_A        14 FAVLTAEITSKIARVPRLPP-D----EKKQMVANVEKQLEEARELLEQMDLEVR-EIp-----pQ-SRGMYSNRMRSYKQ 81  house mouse
Q7RGW8        16 YMKTVNYTEKIIKDNN---S------DQNKLLNIYEKAVNSAESMFKRMQLEVEtNTiis-dqqN-ELNEIQTKITEYKY 84  Plasmodium yoel...
Q24E32        37 FNKIVNQIQKMLANVQNLDQ-N----KKDKTMIDIKYELNEADLQIKQMEIEVN-SLp-----yQ-TKQQLQQKIKRYRN 104 Tetrahymena the...
A0E3A1        12 FEKYQQQVCSLIRQTQIN--------RSDETLKEIASVFTDLQNCLQQMDIEST-SIa-----vS-DRQELKNKVKRYKS 76  Paramecium tetr...
Q23YX3        11 INDMLDNFEKEVKQLDKK---Da--aQKKKAIQKNQTYLKSIEQMIQSYKLEVQ-ALd-----rN-ESAQYTESLKQINS 78  Tetrahymena the...
A0CX93        11 LNAELDKLQKEIDSLSKK---Ey--nQKNAAIKKCQAQVKSISTLIESYELEIS-NLd-----kV-QSAKYNDSLRSINQ 78  Paramecium tetr...
XP_001305386  15 aegLLDQIKSDMGRLDGQPL-D----KRRALDAEIERKISSLENLLNKMTADLR-SVtq----qS-SKSFYEGEIKNYRA 83  Trichomonas vag...
XP_001324282  11 IDRIKKDISNAVSNLPQYSA-Q----ERPSKMQKIEARFGEFDAAINELDLQAL-MFd-----vN-DKNAAKKYLVEVRN 78  Trichomonas vag...
XP_002295151  14 FLSLTEQVTSKLRSLDPSTS-SglppTAEADIKMAHNLLLQADDLLKQMGLEAR-GVd-----dAgVKRDLLGKVRVCKT 86  Thalassiosira p...
XP_002370519  12 FLNSYALLKSGCATLRTEDRsA----ERRRGIARCGKYLQQAESALHQFELETR-MPptdgfadV-DEFSLKSKAANYRQ 85  Toxoplasma gond...
1VCS_A        82 EMGKLETDFKR 92  house mouse
Q7RGW8        85 KLKKYKDEFLE 95  Plasmodium yoelii yoelii
Q24E32       105 EWDSLKKKqik 115 Tetrahymena thermophila SB210
A0E3A1        77 ETEAMKKQFRI 87  Paramecium tetraurelia
Q23YX3        79 RYMRLKNDFEY 89  Tetrahymena thermophila SB210
A0CX93        79 RFQRLKSELEF 89  Paramecium tetraurelia
XP_001305386  84 EHSKVIEELRQ 94  Trichomonas vaginalis G3
XP_001324282  79 EYKKLQNEYTD 89  Trichomonas vaginalis G3
XP_002295151  87 RLANLRDDYEa 97  Thalassiosira pseudonana CCMP1335
XP_002370519  86 ELKEAAQEFRD 96  Toxoplasma gondii ME49
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