4WFC


Conserved Protein Domain Family
Sas10_Utp3
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pfam04000: Sas10_Utp3 (this model, PSSM-Id:281929 is obsolete and has been replaced by 461123)
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Sas10/Utp3/C1D family
This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex. It also includes the human C1D protein and Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs, and Sas10 which has been identified as a regulator of chromatin silencing. This family also includes the human protein Neuroguidin an initiation factor 4E (eIF4E) binding protein.
Links
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Statistics
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PSSM-Id: 281929
Aligned: 358 rows
Threshold Bit Score: 29.0894
Created: 25-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4WFC_B        11 VRSFSKALDELKPEIEKLTSK----SLDEQLl---------LLSDERAKLELInrYAYVLSSLMFanMKVLGv-kDMSp- 75  baker's yeast
Q8IDC4       213 SLNIEKVFNEIKENQKLFEFK----DINEKNvpssd-inknTLLYLKKKNETM--LTYIIYITYYvfLKVMNs--YTPth 283 Plasmodium falc...
Q7RBX2       236 SLNIEKVFNEINENQKLFQFK----NINENDvspsd-inknTLLYLKKKNETM--LTYIIYITYYvfLKVMNc--YTHnh 306 Plasmodium yoel...
A0DDV4       145 wpELKGILKEITQVGKEIKIL----KRNCKKekgs-----eikkYLTIRIELM--QSYFGLLWFYlhLRARTr--LSQhh 211 Paramecium tetr...
CBN76772     297 LGEVRAQLGTLTESVQPLVSN----VTAEIGas------kdGLVYLRTRQQLL--LAYCMNVCFYmvLKAKGepakGHp- 363 Ectocarpus sili...
XP_001019939 158 aQEMNISISEVTDKLFPIMDV----EEAKKIlp------gkGQNFLEIRYEIL--ISYTMCILFYllLKSKGkitnNHp- 224 Tetrahymena the...
XP_002011516 188 tQDFQQHLSEVQQLTAPVLNY----VRNHQVpmv------paLQFALLYQNVL--LTHCSNVSFYllLKAKRssikYHp- 254 Drosophila moja...
XP_002261311 244 slNIQKVYNELKENKRLFQFK----DINEHNvnqadinkntLL-YLKKKNETM--LTYIIYITYYvfLKIMNaythNHp- 315 Plasmodium know...
XP_003387620 228 KNSQKEKFDKLSPKAKLISML----D--------------------QLYHL------YKLNIVFYltLQANQa--SVVdh 275 Amphimedon quee...
XP_009530836 239 mSELEATTKELEEVVTPAVMKlrpvRRKSRQlq-------mGLRYLMTRQNLL--LNYSANISFYllLRAEGk--SVSdh 307 Phytophthora sojae

4WFC_B        76 -ILGELKRVKSYMD 88  baker's yeast
Q8IDC4       284 pVLDKLIYMNTIIS 297 Plasmodium falciparum 3D7
Q7RBX2       307 pVLDKLIYINTIIS 320 Plasmodium yoelii yoelii
A0DDV4       212 pIFKKINDLKELIE 225 Paramecium tetraurelia
CBN76772     364 -VVrrllslrglle 376 Ectocarpus siliculosus
XP_001019939 225 -VLDKLTKYKTMIE 237 Tetrahymena thermophila SB210
XP_002011516 255 -VVKRLVQLKQLRE 267 Drosophila mojavensis
XP_002261311 316 -VLDKLIYMNTIIa 328 Plasmodium knowlesi strain H
XP_003387620 276 pVMSRIMELQHMLE 289 Amphimedon queenslandica
XP_009530836 308 pVLMHLLLLKKQLN 321 Phytophthora sojae
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