1IUF


Conserved Protein Domain Family
HTH_Tnp_Tc5

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pfam03221: HTH_Tnp_Tc5 (this model, PSSM-Id:281246 is obsolete and has been replaced by 460850)
Click on image for an interactive view with Cn3D
Tc5 transposase DNA-binding domain
Statistics
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PSSM-Id: 281246
Aligned: 155 rows
Threshold Bit Score: 36.0562
Created: 9-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1IUF_A        82 YPLLEAALFEWQVQ---QGDDATLSGETIKRAAAILwhkipEYQDQPV--PNFSNGWLEGFRKRHILH 144 fission yeast
XP_001525574  73 NPILRKILAEWITQl--IWENIPVTIPIVQLTANNIwtrlpASVKSGN--GIFSQKWCSHFIKKLNVN 136 Lodderomyces elongisporus N...
EDK41749     124 NPLLRSILSEWITQc--IWEGIPITTPVIQSTASSIwtrlpPQEKDGN--GIFNHKWCYEFIKKLDIN 187 Meyerozyma guilliermondii A...
NP_001122492  72 YADVDLQVNKEIVRr--QNKGERLTNPWIKEYAQYVay--qLHPEIPDiaKFFDANWLYRFKRRYCVE 135 Caenorhabditis elegans
XP_001983711  91 LNFLGHCLYEYIQRa-qYYLNVDINEELIRTKALEFq----TLMDIDN--FVPNKSWINHFKAAYNIT 151 Drosophila grimshawi
XP_001957390  91 LRFLGHCLYEYIQRa-qYYLNTEITEELIRNRAQDFr----DLLRLEG--FVPSKSWMNHFKAKFNIT 151 Drosophila ananassae
XP_001957382 153 VSMLGKAVYDWIRRm-mYYKDFSISDGLIQKMALQFk----SSMGLAH--FFPHQEWCDKFRRTYRLN 213 Drosophila ananassae
XP_001984637 111 MSAISFLLHEWVERcrqLCLGVTIRNHTLKETALKMa----AVLKLPA--FRPSYRWLNRFRSKYKYE 172 Drosophila grimshawi
XP_001957155 106 MSAISFLLREWVERcrqLHLNISITNQKLKDTALRMa----AILNLPS--FRPSYRWLNRFRGKYKYE 167 Drosophila ananassae
XP_001416139 227 LDQLAKIVKHYIR------VGISLSQETILSMAKNFyr-deHHADPSD--KTFGSAWFYRFLNRHGID 285 Ostreococcus lucimarinus CC...
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