4PIR,1OED,1OED


Conserved Protein Domain Family
Neur_chan_memb

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pfam02932: Neur_chan_memb (this model, PSSM-Id:280999 is obsolete and has been replaced by 460753)
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Neurotransmitter-gated ion-channel transmembrane region
This family includes the four transmembrane helices that form the ion channel.
Statistics
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PSSM-Id: 280999
Aligned: 50 rows
Threshold Bit Score: 97.726
Created: 11-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4PIR_E   227 LLLPSIFLMVVDIVGFCLPPDS-GERVSFKITLLLGYSVFLIIVSDTLP-ATaIGTPLIGvYFVVCMALLVISLAETIFI 304 house mouse
P28476   268 TYFPATLMVMLSWVSFWIDRRAvPARVSLGITTVLTMTTIITGVNASMPrVS-YVKAVDI-YLWVSFVFVFLSVLEYAAV 345 human
P24046   288 TYFPATLMVMLSWVSFWIDRRAvPARVPLGITTVLTMSTIITGVNASMPrVS-YIKAVDI-YLWVSFVFVFLSVLEYAAV 365 human
P26714   256 TYLPSILIVMLSWVSFWINHEAtSARVALGITTVLTMTTISNGVRSSLPrIS-YVKAIDI-YLVMCFVFVFAALLEYAAV 333 great pond snail
P19019   250 TYMPSILITILSWVSFWINYDAsAARVALGITTVLTMTTINTHLRETLPkIP-YVKAIDM-YLMGCFVFVFLALLEYAFV 327 chicken
P24045   249 TYMPSILITILSWVSFWINYDAsAARVALGVTTVLTMTTINTHLRETLPkIP-YVKAIDV-YLMGCFVFVFLALLEYAFV 326 chicken
P08220   250 TYMPSTLITILSWVSFWINYDAsAARVALGITTVLTMTTISTHLRETLPkIP-YVKAIDI-YLMGCFVFVFLALLEYAFV 327 cattle
P25123   274 IYIPSGLIVIISWVSFWLNRNAtPARVALGVTTVLTMTTLMSSTNAALPkIS-YVKSIDV-YLGTCFVMVFASLLEYATV 351 fruit fly
P22933   254 SYMPSVLLVAMSWVSFWISQAAvPARVSLGITTVLTMTTLMVSARSSLPrAS-AIKALDV-YFWICYVFVFAALVEYAFA 331 house mouse
ELR54641 241 MYIPSLLIVILSWISFWINMDAaPARVGLGITTVLTMTTQSSGSRASLPkVS-YVKAIDI-WMAVCLLFVFSALLEYAAV 318 Bos mutus
4PIR_E   305 VRLVH--KQDLQRPVPDWLRHLVLDRIAWILCLGEQPMAHRPPA------------------------------------ 346 house mouse
P28476   346 NYL---------TTVQERKERKLREKFPCMCGM----------------------------------------------- 369 human
P24046   366 NYL---------TTVQERKEQKLREKLPCTSGLPPP-------------------------------------------- 392 human
P26714   334 NYTYWgaRAKRKAKRLRERATSVRKRVDDGDQMNNTNMDTVELKevhmvp------------------------------ 383 great pond snail
P19019   328 NYIFFg-KGPQRQKKLAEKSAKANNDRSRFEGSRVDTH------------------------------------------ 364 chicken
P24045   327 NYIFFg-RGPRQQKKQSERISKANNERHRYEEKRVReq------------------------------------------ 363 chicken
P08220   328 NYIFFg-KGP--QKKGAGKQDQSANEKNKLEMNKVQVDAH---------------------------------------- 364 cattle
P25123   352 GYMAK--RIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNAnvggpggvgvgpggpggpgggvnvgvgmgmgpehgh 429 fruit fly
P22933   332 HFNADy-RKKRKAKVKVTKPRAEMDVRNAIVLFSLsa------------------------------------------- 367 house mouse
ELR54641 319 NFVSR-----QHKELLRFRRKRRHHKSPMLNLFQEDea------------------------------------------ 351 Bos mutus
4PIR_E   347 --------------------------TF-----------------QANKTDDCS------AMGNHCSHVGGPQDLEKTPR 377 house mouse
P28476   370 ---------------------------------------------LHSKTMMLDgs--ysESEANSLAGYPRSHILTEEE 402 human
P24046   393 ---------------------------------------------RTAMLDGNYsdgevnDLDNYMPENGEKPDRMMVQL 427 human
P26714   384 --------------------tsvgvtNS-----------------QSFNLDLDDgs--gdDTGFRVVPPIPRSFTHSHAT 424 great pond snail
P19019   365 ---------------------------------------------GNILLTSLEihnevaSNEVTTSVTDARNSTISFDN 399 chicken
P24045   364 ------------------------vdPY-----------------GNILLSTLDmnnellATDMMSSVGDSRNSVMSFEG 402 chicken
P08220   365 ---------------------------------------------GNILLSTLEirnetsGSEVLTGVGDPKTTMYSYDS 399 cattle
P25123   430 ghghhahshghphapkqtvsnrpigfSNiqqnvgtrgcsivgplfQEVRFKVHDpkahskGGTLENTVNGGRGGPQSHGP 509 fruit fly
P22933   368 ------------------------agVS-----------------QELAISRRQgr--vpGNLMGSYRSVEVEAKKEGGS 404 house mouse
ELR54641 352 ------------------------geGR-----------------FNFSAYGMGpaclqaKDGISVKGANNSNTTNPPPA 390 Bos mutus
4PIR_E   378 --GRGSPLPp-----pREASLAVRGLLQELSSIR------HFLEKRDEMREVARDWLRVGYVLDRLLFRIYLLAVLAYSI 444 house mouse
P28476   403 rqDKIVVH--------LGLSGEANAARK------------KGLLKGQTGFRIFQN----THAIDKYSRLIFPASYIFFNL 458 human
P24046   428 tlAS------------ERSSP-------------------QRKSQRSSYVSMRID----THAIDKYSRIIFPAAYILFNL 472 human
P26714   425 thGYIPTNVvrr-rssSHVPPRRRRLL-------------SHFRQKAKSIKVKIPRVQDVNTIDKYARLMFPLLFIIFNT 490 great pond snail
P19019   400 sgIQYRKQSs-----hRESLGRRSSDRTGSHSKR------GHLRRRSSQLKIKIPDLTDVNAIDRWSRMVFPFTFSLFNL 468 chicken
P24045   403 sgIQFRKPLasr--dgFGHHPTLDRHVPLTHHAAarnranCRLRRRSSKLKLKIPDLTDVSTIDKWSRIIFPITFGFFNL 480 chicken
P08220   400 asIQYRKPMss----rEGYGRALDRHGAHSK---------GRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNV 466 cattle
P25123   510 gpGQGGGPPgggggggGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNL 583 fruit fly
P22933   405 ----------------RPGGP-------------------GGIRSRLKPIDADT--------IDIYARAVFPAAFAAVNI 441 house mouse
ELR54641 391 ----------------PSKSP----------------------------EEMRKLFIQRAKKIDKISRIGFPMAFLIFNM 426 Bos mutus
4PIR_E   445 TLV 447 house mouse
P28476   459 IYW 461 human
P24046   473 IYW 475 human
P26714   491 SYW 493 great pond snail
P19019   469 IYW 471 chicken
P24045   481 VYW 483 chicken
P08220   467 VYW 469 cattle
P25123   584 MYW 586 fruit fly
P22933   442 IYW 444 house mouse
ELR54641 427 FYW 429 Bos mutus
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