4AE2


Conserved Protein Domain Family
COLFI

?
pfam01410: COLFI (this model, PSSM-Id:279718 is obsolete and has been replaced by 460199)
Click on image for an interactive view with Cn3D
Fibrillar collagen C-terminal domain
Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Statistics
?
PSSM-Id: 279718
Aligned: 22 rows
Threshold Bit Score: 328.123
Created: 20-Jun-2015
Updated: 5-Aug-2015
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4AE2_A         23 EIMTSLKSVNGQIESLISPDG-SRKNPARNCRDLKFCHPE----LKSGEYWVDPNQGCKLDAIKVFCNMET-G-ETCISA 95   human
P20908       1610 EIFGSLNSLKLEIEQMKRPLG-TQQNPARTCKDLQLCHPD----FPDGEYWVDPNQGCSRDSFKVYCNFTAgG-STCVFP 1683 human
P12107       1578 EIFGSLNSLKQDIEHMKFPMG-TQTNPARTCKDLQLSHPD----FPDGEYWIDPNQGCSGDSFKVYCNFTSgG-ETCIYP 1651 human
Q17A80        616 DMYSSIYSMRQELDRIRKPVG-TRENPGRTCRDLHYGHPQ----FKDGWYWIDPNLGMADDAVYVFCNMTAeG-ETCVFP 689  yellow fever ...
CAG01332     1422 GVHATLKTLRRRLSDLRSPDG-SRMDPAKTCQDLRHSHPD----KKSGEYWIDPDGGSAKDAIRVFCNMEA-G-ETCISA 1494 spotted green...
XP_008275382 1595 DVFGSLNNLKQDIERMKFPMG-TQDNPARTCNDLHLSQPD----YPDGEYWIDPNQGCIGDSIKVFCNFTAgG-ETCIYP 1668 bicolor damse...
NP_001029004  606 EMMVVLKELTNSVENIKAPRGvSKKTAARSCMDIYLAEQQqnivAKNGIRWIDPNGGCTADGIEVYCNFDT-M-ETCVYP 683  vase tunicate
NP_001073461 1466 EIFGSLNSLRQEIESMRFPLG-TKESPGRTCQDLHLSQPD----LKDGEYWIDPNQGCARDSFKVYCNFTAgG-ETCLYP 1539 zebrafish
BAD92412     1428 EVLASLTSLSLELEQLRRPPG-TAERPGLVCHELHRNHPH----LPDGEYWIDPNQGCARDSFRVFCNFTA-GgETCLYP 1501 human
XP_011679217 1569 VLFSSLDQLQTDVEGIKKPNG-TKDNPARTCKDLLMCHPK----TQDGYYWIDPNEGCPDDAFYAFCNMTAgG-DTCLAP 1642 purple sea ur...
4AE2_A         96 NPLNVP-RKHWWTD---SSaeK----------KHVWFGESMDGGFQFSY-G----NPELPEDVlDVQLAFLRLLSSRASQ 156  human
P20908       1684 DKKSEGaRITSWPK---EN-------------PGSWFSEFKRGKL-LSY-V----DAEGNPVG-VVQMTFLRLLSASAHQ 1740 human
P12107       1652 DKKSEGvRISSWPK---EK-------------PGSWFSEFKRGKL-LSY-L----DVEGNSIN-MVQMTFLKLLTASARQ 1708 human
Q17A80        690 DLHSSQmPNIPWRK---EN--D----------KTDWYSNLRGGFR-ISY----------ETVG-VVQMTFLRLLSEGAYQ 742  yellow fever ...
CAG01332     1495 SPANIP-RKSWWTKaspSS--S----------KPVWFGSDMNAGSRFQYgH----GDELGNTA-AVQLKLLQLLSTESHQ 1556 spotted green...
XP_008275382 1669 DKKSTGvRISNWPK---ES-------------PGSWFSEFKRGKI-LNY-V----DMAENTIN-TVQMTFLKLLSSSARQ 1725 bicolor damse...
NP_001029004  684 TNRHIE-NGTHYTG---ES-------------RHVYYGEEMATGSTVRY-DpsdeDRVPHADY-TSQLTFLRLLSRQVKQ 744  vase tunicate
NP_001073461 1540 SKAVENvKMNSWIK---EK-------------PGSLFSQFAKGNK-FSY-V----DSVGEAVG-VVQLGFLRLLSVQARQ 1596 zebrafish
BAD92412     1502 DKKFEIvKLASWSK---EK-------------PGGWYSTFRRGKK-FSY-V----DADGSPVN-VVQLNFLKLLSATARQ 1558 human
XP_011679217 1643 DNTTGH-HFYNYTE---EN--StetkgyrkavPGEWFLENLRGK-EFSY-----------QGG-IVQLTFLRLLSSKATQ 1703 purple sea ur...
4AE2_A        157 QITYHCKNSIAYMDQAS-GNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLPIVDIA 235  human
P20908       1741 NVTYHCYQSVAWQDAAT-GSYDKALRFLGSNDEEMSYD--NNPYIRALVDGCATKKGY-QKTVLEIDTPKVEQVPIVDIM 1816 human
P12107       1709 NFTYHCHQSAAWYDVSS-GSYDKALRFLGSNDEEMSYD--NNPFIKTLYDGCASRKGY-EKTVIEINTPKIDQVPIVDVM 1784 human
Q17A80        743 NFTYTCMNSVAWYSNLE-ENHDDAIRFLGDNEIDIGYEN-SKLRPNVLVDGCKSGKSK-SETIFEIRTTKLQYLPIIDFY 819  yellow fever ...
CAG01332     1557 NITFHCRNTVAYKEQTS-GQLKKALVLRGANGQELRAQGNARLRYTVTKDGCSKSDGLWGKTVIQYRSQTAARLPVLDLG 1635 spotted green...
XP_008275382 1726 NFTYICHQSVAWYDAKA-DNYDKALRFLGSNDEEMSYDNN--PFIKPLMDGCSLKQGY-SKTVMEINTPRIDQLPIIDVM 1801 bicolor damse...
NP_001029004  745 HVTFYCRNMVAYYDAAA-DNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPITDIA 823  vase tunicate
NP_001073461 1597 NLTYHCQRSVAWTDQTTdGGYKRALRLQGANDEEISYE--TSPYIKALIDGCSYRKGL-DRTVLEVNTPQVEQLPLLDIR 1673 zebrafish
BAD92412     1559 NFTYSCQNAAAWLDEAT-GDYSHSARFLGTNGEELSFNQTTAATVSVPQDGCRLRKGQ-TKTLFEFSSSRAGFLPLWDVA 1636 human
XP_011679217 1704 KFTYSCVNGVAWYDEAE-DSFDNAIRLLASNDEEFTFDGLN--QPKVIKDECKNKPSL-GETILEVNTSKLHQLPISDFA 1779 purple sea ur...
4AE2_A        236 PYDIGGPDQEFGVDVGPVCF 255  human
P20908       1817 FNDFGEASQKFGFEVGPACF 1836 human
P12107       1785 INDFGDQNQKFGFEVGPVCF 1804 human
Q17A80        820 PVDYGQPQQAFGFQVGPVCF 839  yellow fever mosquito
CAG01332     1636 LMDTGKAEQEFGLDIGPVCF 1655 spotted green pufferfish
XP_008275382 1802 LNDFGDSNQRFGFEVGPVCF 1821 bicolor damselfish
NP_001029004  824 PFDIGGADQQFGAEFGPACF 843  vase tunicate
NP_001073461 1674 ISDFGEDNQKFGFEVGPVCF 1693 zebrafish
BAD92412     1637 ATDFGQTNQKFGFELGPVCF 1656 human
XP_011679217 1780 PLDFGRRNQKFGYTVGSACF 1799 purple sea urchin
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap