1IXD,1WHJ,2COZ,2CP6,1WHH,2CP5,2COW,2HKN,1TOV,1WHK,4B6M


Conserved Protein Domain Family
CAP_GLY

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pfam01302: CAP_GLY (this model, PSSM-Id:279625 is obsolete and has been replaced by 460154)
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CAP-Gly domain
Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Statistics
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PSSM-Id: 279625
Aligned: 776 rows
Threshold Bit Score: 38.9789
Created: 20-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1IXD_A         21 GSLAEV---KEnppfYGVIRWIGQppg---lneVLAGLELeDEc-aGCTDGTFRGTRYFTCAL-KKALFVKLKSC 87   human
ETO13138      490 GDLVLL---SQd--rEGIIRFIGTvdf---dagVWYGVEL-LGgskGEHNGEVSGKKYFHTQEpQRGLFVKIEDi 555  Reticulomyxa filosa
ETO19455      203 GDRVLL---SKd--rEGIVKYIGIvsgi-sestLQYGIEL-IAgslGEHNGTYQGKNYFQGTD-QRCIFVDHNNi 269  Reticulomyxa filosa
ETO19765       28 GDHVLL---SKd--rEGVVKYIGIvpsi-seetLQYGIEL-MAgniGEHNGTYEGKYYFLGNE-QRCVFVDSEQL 94   Reticulomyxa filosa
ETO20764      368 GDYVFL---SQd--rEGYIRYIGEvdfdnhhkgPWYGIEL-MGgslGEHDGTYYGVTYFKCPS-KRGVFLTKKdi 435  Reticulomyxa filosa
ETO32129      109 NDRVEVakrG-----KGVVKFVGSves---tsgYWYGVEL-DEk-sGQHSGTIGGIAYFHCKH-LHGVHVRSGal 172  Reticulomyxa filosa
ETO28392      149 NDQVLVn-------kRGKVLFVGPvak---tegFWYGIEL-DEk-iGHHNGTIGGVEYFRCSL-SKGIHMRSMal 210  Reticulomyxa filosa
XP_001031446    9 NDRIKLtnnANkd-qEGTILYIGQldg---kegIWIGVEL-DLp-kGSHNGQFNGKQYFQG-RdQHCMFVKEKHI 76   Tetrahymena thermo...
XP_004037550    9 GDYVQLtntQNkd-qEGYIKFIGQleg---kegIWVGVEL-TIq-kGTHNGTFQDKKYFEC-KeLHGIFVREKHL 76   Ichthyophthirius m...
ETO30119       19 GDRVVVdkdK-----NGQVKWIGEhqvl--gtgKHYGIRLte--krGLCNGTYKEVKFFWC-PdNYGVLVPANRI 83   Reticulomyxa filosa
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