1K8I,4P4R,4P46,3QIW,3C5J,1HDM,4I0P


Conserved Protein Domain Family
MHC_II_beta

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pfam00969: MHC_II_beta (this model, PSSM-Id:279334 is obsolete and has been replaced by 425967)
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Class II histocompatibility antigen, beta domain
Statistics
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PSSM-Id: 279334
Aligned: 27 rows
Threshold Bit Score: 96.2183
Created: 21-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1K8I_B         8 STCVLnDAGTPQDf-TYCVSFNKDLLACWDPDVGKIVPCEFGVlsrlaEIISNILNEQESLIHRLQNGLQDCATHTQPFW 86  house mouse
4P46_D        39 GECYF-TNGTQRIryVTRYIYNREEYVRYDSDVGEHRAVTELG-----RPDAEYWNSQPEILERTRAELDTVCRHNYEGP 112
P06341         8 GLCYY-TNGTQRIrsVDRRFYNQEEFLRYDSDVGEFRALTELG-----RSWADDWNSQKEILEQKRAEMDTVCRYNYEET 81  Norway rat
P15982        45 GECYF-YNGTQRVrgVARYIYNQEEHLRFDSDVGEFRAVTPLG-----RPEADSWNSQKDVLEQMRAEVDRVCKHNYQIE 118 pig
Q1MTC8        29 QQCFYsTSDYSDMvyLASYSFNKVVDTQFNSSVGKFVGYTEQG-----LIFAENFNKDQAYLHQLKAQVDTFCRHNAQIW 103 zebrafish
1HDM_B         9 STCLLdDAGTPKDf-TYCISFNKDLLTCWDPEENKMAPCns-----laNVLSQHLNQKDTLMQRL-NGLQNCATHTQPFW 81  human
Q6MGA7        27 STCLLdDEGTPMDf-TYCISFNKDLLACWDPEEGQIVPCEYGVlfklaEFISNILNKEEGLIQRLKNGLQDCSTHTQPFW 105 Norway rat
P23068         8 VECHF-LNGTERVrfLVRHVYNRQQYVHFDSDVGLFVADTVLG-----EPSAKLFNSQPDVLEKNRAAVEMLCNYNYEIV 81  chicken
AAV80469       8 aECHY-LNGTERVryLVRYVYNRQEYAHFDSDVGKHVADTPLG-----EPQAEYWNSNAEILENRMNEVDTYCRHNYGVV 81  chicken
XP_011956265  31 gECRF-SNGLQRMrfFARYIYNTKEDVHFDSDVGEFTALTELG-----RPDAEYWNQQKDFMEQMRAKVDTVCRSNYQgi 104 sheep
1K8I_B        87 D 87  house mouse
4P46_D       113 E 113
P06341        82 E 82  Norway rat
P15982       119 E 119 pig
Q1MTC8       104 D 104 zebrafish
1HDM_B        82 G 82  human
Q6MGA7       106 N 106 Norway rat
P23068        82 A 82  chicken
AAV80469      82 E 82  chicken
XP_011956265 105 g 105 sheep
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