4MXW,2O0O,1TNR,1DU3,3URF,4HT1,2X29,1A8M,3QD6


Conserved Protein Domain Family
TNF

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pfam00229: TNF (this model, PSSM-Id:278650 is obsolete and has been replaced by 425540)
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TNF(Tumour Necrosis Factor) family
Statistics
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PSSM-Id: 278650
Aligned: 30 rows
Threshold Bit Score: 81.9667
Created: 19-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4MXW_B  60 LGWETTKE--QAFLTSGTQFSDAEg-LALPQDGLYYLYCLVGYR--GRAPPGGgdpqgrSVTLRSSLYRAGGAYgpGTPE 134 human
3URF_A  24 SSWYHDR---GWAKISNMTFSNGK--LIVNQDGFYYLYANICFR--HHETSGDla--teYLQLMVYVTKTSIKI--PSSH 92  human
Q9I8D8 152 LKWMTTS---YAPTSSLISYHEGK--LKVEKAGLYYIYSQVSFCt-KAAAS---------APFTLYIYLYLPM---EEDR 213 chicken
P27548 137 LQWAKKGY--YTMKSNLVMLENGKq-LTVKREGLYYVYTQVTFC--SNREPSS------QRPFIVGLWLKPSS---GSER 202 house mouse
O97605 137 LQWAPKGY--YTISSNLVTLENGKq-LAVKRQGLYYIYAQVTFC--SNREASS------QAPFIASLCLHSPS---GSER 202 domestic cat
4HT1_T  36 SGWEEARI--NSSSPLRYNRQIGE--FIVTRAGLYYLYCQVHFD---EGKA---------VYLKLDLL--------VDGV 91  human
P32971 113 LSWNKDGI------LHGVRYQDGN--LVIQFPGLYFIICQLQFL---VQCPNN------SVDLKLELLINKH----IKKQ 171 human
P32972 118 LSWNEDGT------IHGLIYQDGN--LIVQFPGLYFIVCQLQFL---VQCSNH------SVDLTLQLLINSK----IKKQ 176 house mouse
P41274 164 LNWHSQDGagSSYLSQGLRYEEDKkeLVVDSPGLYYVFLELKLSptFTNTGHK------VQGWVSLVLQAKPQV--DDFD 235 house mouse
3QD6_A  26 LQWAEKGY--YTMSNNLVTLENGKq-LTVKRQGLYYIYAQVTFC--SNREASS------QAPFIASLCLKSPGR---FER 91  human
4MXW_B 135 LLLEGAE-TVTPVLDPARrqgygplWYTSVGFGGLVQLRRGERVYVN--ISHPDMVDFA--RGKTFFGAVMV 201 human
3URF_A  93 TLMKGGS-TKYWSGNSEF-------HFYSINVGGFFKLRSGEEISIE--VSNPSLLDPD--QDATYFGAFKV 152 human
Q9I8D8 214 LLMKGLDtHSTSTALC---------ELQSIREGGVFELRQGDMVFVN--VTDSTAVNVN--PGNTYFGMFKL 272 chicken
P27548 203 ILLKAANtHSSSQLC----------EQQSVHLGGVFELQAGASVFVN--VTEASQVIHR--VGFSSFGLLKL 260 house mouse
O97605 203 VLLRAANaRSSSKPC----------GQQSIHLGGVFELHPGASVFVN--VTDPSQVSHG--TGFTSFGLLKL 260 domestic cat
4HT1_T  92 LALRCLEeFSATAASSLGp------QLRLCQVSGLLALRPGSSLRIR----TLPWAHLKaaPFLTYFGLFQV 153 human
P32971 172 ALVTVCE-SGMQTKH----------VYQNLSQFLLDYLQVNTTISVN--VDTFQYIDTStfPLENVLSIFLY 230 human
P32972 177 TLVTVCE-SGVQSKN----------IYQNLSQFLLHYLQVNSTISVR--VDNFQYVDTNtfPLDNVLSVFLY 235 house mouse
P41274 236 NLALTVElFPCSMENKLVdr----sWSQLLLLKAGHRLSVGLRAYLHgaQDAYRDWELSy-PNTTSFGLFLV 302 house mouse
3QD6_A  92 ILLRAAN-THSSAKPC---------GQQSIHLGGVFELQPGASVFVN--VTDPSQVSHGt--GFTSFGLLKL 149 human
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