3MWY,4S20


Conserved Protein Domain Family
SNF2_N
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pfam00176: SNF2_N (this model, PSSM-Id:278600 is obsolete and has been replaced by 425504)
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SNF2 family N-terminal domain
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Links
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Statistics
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PSSM-Id: 278600
Aligned: 30 rows
Threshold Bit Score: 161.341
Created: 10-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3MWY_W        240 FQ---------LTGINWM-------AFL--WSKg---------------------------------------------- 255  baker's yeast
P05807         34 YQhfvarvflgLDSMHSL-------------------------------------------------------------- 51   Vaccinia viru...
P24486         40 YQyfasrifigLKNLNSM-------------------------------------------------------------- 57   Choristoneura...
XP_004935641  310 YQ---------SEAVNWM-------LHRenFTNtpenalhflwrevitldgvki-------------------------- 347  chicken
NP_001045418  284 HQ---------EAAVEWM-------LRReqNLQvlehplykglctmdgfpyy---------------------------- 319  Japanese rice
XP_001743850  741 HQ---------IRSVKWMrareaglHGRfdSPQhmpvaarfvqhqerhgwqhi--------------------------- 784  Monosiga brev...
CBJ27911      227 HQ---------KEGLAWM-------VQRenNPDpngarlddgkknnpdsngkgcqshssglpp----------------- 273  Ectocarpus si...
XP_002947308  217 YQ---------RRAVAWMlrreqvvLEReqNDEdttaaatgfnsgkggaeqrgeaaqvqppqgreamdwdaavavaaarg 287  Volvox carter...
NP_009672     187 FQ---------LEGLHWL-------ISQeeSIY----------------------------------------------- 203  Saccharomyces...
P41447         33 HQ---------KKGIQWM-------INRekNGRp---------------------------------------------- 50   Autographa ca...

3MWY_W        256 ---------------------------------------------------------DNGILADEMGLGKT--------- 269  baker's yeast
P05807         52 ------------------------------------------------------------LLFHETGVGKT--------- 62   Vaccinia viru...
P24486         58 ------------------------------------------------------------LLFWDTGTGKT--------- 68   Choristoneura...
XP_004935641  348 -------------------------------------yynpftgcvireypfagpqwPGGILADEMGLGKT--------- 381  chicken
NP_001045418  320 --------------------------------------invtsgeistgsaptvhdfCGGMFCDEPGLGKT--------- 352  Japanese rice
XP_001743850  785 -------------------------------------ffvdaetgnvepspetrqssRGGLLCDDPAATETdplpaekst 827  Monosiga brev...
CBJ27911      274 ----------------------------fweqrveggkgvfhntitcssqpcrpasvHGGILSDDMGLGKT--------- 316  Ectocarpus si...
XP_002947308  288 pasadvqeggdlraaapplhplwrrlrtlpgsaaeavyvnpytgalaavpfpapqpvRGGILADEMGLGKT--------- 358  Volvox carter...
NP_009672     204 ---------------------------------------------------------AGGVLADEMGMGKT--------- 217  Saccharomyces...
P41447         51 ---------------------------------------------------------NGGVLADDMGLGKT--------- 64   Autographa ca...

3MWY_W            --------------------------------------------------------------------------------      baker's yeast
P05807            --------------------------------------------------------------------------------      Vaccinia viru...
P24486            --------------------------------------------------------------------------------      Choristoneura...
XP_004935641      --------------------------------------------------------------------------------      chicken
NP_001045418      --------------------------------------------------------------------------------      Japanese rice
XP_001743850  828 tkpstlrnlafrrfmkeearmrgiderlfdepvdlslypdythtvtrpiavrnirdrhytsfqalyddlqlmlangaqyn 907  Monosiga brev...
CBJ27911          --------------------------------------------------------------------------------      Ectocarpus si...
XP_002947308      --------------------------------------------------------------------------------      Volvox carter...
NP_009672         --------------------------------------------------------------------------------      Saccharomyces...
P41447            --------------------------------------------------------------------------------      Autographa ca...

3MWY_W        270 ----VQTVAFISWL------------------------------------------------------------------ 279  baker's yeast
P05807         63 ----MTTVYILKHLk----------------------------------------------------------------- 73   Vaccinia viru...
P24486         69 ----LTAVYIIKYIk----------------------------------------------------------------- 79   Choristoneura...
XP_004935641  382 ----VEVLALILTHtredikqddltlpegelvnffvppqpsqgskkkktremelklkekiqypslrvmvlaavkemnvkk 457  chicken
NP_001045418  353 ----VTALSLILkthgtlavpppgmnvmwcmhkpdkkygyyelsasnssngniflsgskklrkdviredtcsseslnngg 428  Japanese rice
XP_001743850  908 hgtpIQELCLVLQQr----------------------------------------------------------------- 922  Monosiga brev...
CBJ27911      317 ----LQVISLILAQp----------------------------------------------------------------- 327  Ectocarpus si...
XP_002947308  359 ----VELLALITANrfgpksqp---------------------------------------------------------- 376  Volvox carter...
NP_009672     218 ----IQTIALLMNDl----------------------------------------------------------------- 228  Saccharomyces...
P41447         65 ----LSVLMLIAKNn----------------------------------------------------------------- 75   Autographa ca...

3MWY_W        280 ---------------------------------------------------------IFARrqn---------------- 286  baker's yeast
P05807         74 --------------------------------------------------------dIYTNw------------------ 79   Vaccinia viru...
P24486         80 --------------------------------------------------------eLFPRw------------------ 85   Choristoneura...
XP_004935641  458 gasifaifkyisavyrydiqrnrrllkrtlekliaeqvveqvkghglagsfklgknyKEQKrrertkeqaaktseriqkk 537  chicken
NP_001045418  429 svvstrssrkrgrlvnpdlnmiaahpsgkspmsaptgahstpathvlkitknlkhvrknlmeaysdgsvgnkrkrdatse 508  Japanese rice
XP_001743850  923 --------------------------------------------------------lHEHIlslpidrrarrr------- 939  Monosiga brev...
CBJ27911      328 --------------------------------------------------------pAGTDyvkkvlaveankrlkeald 351  Ectocarpus si...
XP_002947308  377 -------------------------------------------------gmaplvaaGQALdpaaaaaaaaggraknrkd 407  Volvox carter...
NP_009672     229 --------------------------------------------------------tKSP-------------------- 232  Saccharomyces...
P41447         76 --------------------------------------------------------sLQLK------------------- 80   Autographa ca...

3MWY_W            --------------------------------------------------------------------------------      baker's yeast
P05807            --------------------------------------------------------------------------------      Vaccinia viru...
P24486            --------------------------------------------------------------------------------      Choristoneura...
XP_004935641  538 qlsdantqtneskdsdvtstdvlkiplrtsiateehdycatikndrksetdnensmeenniqkaavskspdlhgkplisg 617  chicken
NP_001045418  509 lsetwvqcdacrkwrrlldg--taldsstawfcsmnpdsarqkcsipeeswdlkrkitylpgfhkkgtppgneqnasfft 586  Japanese rice
XP_001743850      --------------------------------------------------------------------------------      Monosiga brev...
CBJ27911      352 rgetpppqekeltpqqkqeavakkykk----------------------------------------------------- 378  Ectocarpus si...
XP_002947308  408 walfpgggaivkwlkcerdeplldsavygcrsmwgrryngggvggtvqptspaaavaaa--------------------- 466  Volvox carter...
NP_009672         --------------------------------------------------------------------------------      Saccharomyces...
P41447            --------------------------------------------------------------------------------      Autographa ca...

3MWY_W            --------------------------------------------------------------------------------      baker's yeast
P05807            --------------------------------------------------------------------------------      Vaccinia viru...
P24486            --------------------------------------------------------------------------------      Choristoneura...
XP_004935641  618 disshsdfdvsksttdvqqemprsshsqehasgsvqrtssvfpfntseyrfecicgelglvdykarvqclkchlwqhaec 697  chicken
NP_001045418  587 nilkehaalidsetmkallwlaklspkkhiemeavgltrpvldaranigkgarpyykifqafglvrkvekgitrwyypsm 666  Japanese rice
XP_001743850      --------------------------------------------------------------------------------      Monosiga brev...
CBJ27911      379 ----------------------------------------------------------------lkkadlerelaakgld 394  Ectocarpus si...
XP_002947308  467 -------------------------------rqrlpervdcpcgvraddphdpdveeyeglwilcegcnawmhgacvgvk 515  Volvox carter...
NP_009672         --------------------------------------------------------------------------------      Saccharomyces...
P41447            --------------------------------------------------------------------------------      Autographa ca...

3MWY_W        287 ---------------------------gpHIIVVPL-STMPAWLDTFEKWAPDLNCICYMGNQksrdtirey-------- 330  baker's yeast
P05807         80 ----------------------------aIILLVKKaLIEDPWMNTILRYAPEI-------------------------- 105  Vaccinia viru...
P24486         86 ----------------------------iILIFIKKsLYIDPWLNTISSYISD--------------------------- 110  Choristoneura...
XP_004935641  698 vnykeenlkikpfycphclvamkpvstgaTLIISPS-SICHQWVDEINRHVRSSSLRVLVYQGvkkh------------- 763  chicken
NP_001045418  667 lddlafdsaalgialekpldlvrlylsraTLIVVPA-NLIDHWTTQIQRHVSSDTLNVYVWGDhkk-------------- 731  Japanese rice
XP_001743850  940 -----------------sgrvdvrpmynaTLIIAPTlDLARHWEHEIDAYTAGPHV------Lgrtcml----------- 985  Monosiga brev...
CBJ27911      395 tkgnkndlvgrlstheagltpvdpsvklgTLVVCPM-SVIHNWETQFAEHVKEGALDVYAYHGgnr-------------- 459  Ectocarpus si...
XP_002947308  516 rspqrsaawvcsrclraralapvsepcgaTLIVVPS-AILQQWYDEIRRHVHPGALRVVVYGGqtqpgvsgsgalicsgt 594  Volvox carter...
NP_009672     233 -----------------------------SLVVAPT-VALMQWKNEIEQHTKG-QLKIYIYHGasr-------------- 267  Saccharomyces...
P41447         81 -----------------------------TLIVCPL-SLINHWVTENKKHDLNFNILKYYKSL----------------- 113  Autographa ca...

3MWY_W        331 ----------------------------------------------efytnpraKGKKTMKFNVLLTTYEYILKDR---- 360  baker's yeast
P05807        106 ------------------------------------------------------------TKDCIFINYDDQNFRNkff- 124  Vaccinia viru...
P24486        111 ------------------------------------------------------------TSNIKFIYYDSTSSLDkkfn 130  Choristoneura...
XP_004935641  764 ---------------------------------------------------gflQPHMLAEQDVVITTYDVLRTELnyvd 792  chicken
NP_001045418  732 ----------------------------------------------------psAHNLAWDYDIVITTFSRLS--Aewgp 757  Japanese rice
XP_001743850  986 -------------------------------------------------lntrvLPETFEDYGVVITTLHTLSRVCslp- 1015 Monosiga brev...
CBJ27911      460 ----------------------------------------------------nqDPTFLATKDVVITTYDTLA--Sdfsa 485  Ectocarpus si...
XP_002947308  595 ftpgrvggtavtcgtaaapgglrgpadrgvdgdgnfsvveadvaesmvgrwvvvSAAQLAAADVVLTTYDVLKRDVarqp 674  Volvox carter...
NP_009672     268 ----------------------------------------------------ttDIKDLQGYDVVLTTYAVLESVFrkqn 295  Saccharomyces...
P41447        114 ------------------------------------------------------DADTVEHYHIVVTTYDVLLAHFklik 139  Autographa ca...

3MWY_W        361 ----------------------AELGSIKWQFMAVDEAHRLKNA---E--------SSLYESLNS-FK--VANRMLITGT 404  baker's yeast
P05807        125 -------------------tniKTINSKSRICVIIDECHNFISKsliKedgkirptRSVYNFLSKtIAlkNHKMICLSAT 185  Vaccinia viru...
P24486        131 ni---------------yrsieSSLNKKNRLLIIIDEVHKLISRs-vKkdnnernfTPIYRKLIKlANyeNNKILCMSAT 194  Choristoneura...
XP_004935641  793 iphsnsedgrrfrnqkrymaipSPLVAVEWWRICLDEAQMVECT---T--------AKAAEMALR-LS--GINRWCVSGT 858  chicken
NP_001045418  758 -------------------kkrSVLKQIHWFRVILDEGHTLGSSlalT--------NKLQMAVS--LV--ASNRWILTGT 806  Japanese rice
XP_001743850 1016 -------------------hhyDLFHQRRWHRIVVDEGHTLGKGv--Q--------SRAREAIQS-LG--TDHMWIVSGT 1063 Monosiga brev...
CBJ27911      486 sggqkaleedvtaavggkpkrrHGVGGLGGNRVVLDEAHPFRNN---K--------TNKHKACLA-LS--SRYRWCLTGT 551  Ectocarpus si...
XP_002947308  675 dpegqers---lrhgkryevvpTPLTRLRWWRVVLDEAQMVESS---T--------AKAAEMALK-LD--TVHRWCVTGT 737  Volvox carter...
NP_009672     296 ygfrr---------knglfkqpSVLHNIDFYRVILDEAHNIKDR---Q--------SNTARAVNN-LK--TQKRWCLSGT 352  Saccharomyces...
P41447        140 ------------------qnkqSSLFSTRWHRVVLDEAHIIKNC---K--------TGVHNAACA-LT--ATNRWCITGT 187  Autographa ca...

3MWY_W        405 PLQN----NIKELA-ALVNFLMPGRFTI-----------------------------------DqeidfenQdee----q 440  baker's yeast
P05807        186 PIVN----SVQEFT-MLVNLLRPGSLQhqs------------------------------lfeNkrlvdekE-------- 222  Vaccinia viru...
P24486        195 PITN----NIAEFN-NLIGLLRPNVMNIkee-----------------------------yinNgklinfkE-------- 232  Choristoneura...
XP_004935641  859 PVQR----GLEDLY-GLVLFLGIDPYWVkh-------------------------------wwDqllyrpyCr------- 895  chicken
NP_001045418  807 PTPNtptsQVAHLH-PMLKFLHEEVYGQnyq------------------------------swDtgihrpfEaq-----m 850  Japanese rice
XP_001743850 1064 PTPDllasSGIDFIrGLLITLREPPFCEgntr----------------------------ntfRnlltrpfErhl----a 1111 Monosiga brev...
CBJ27911      552 PLIN----KPEDIG-ALFSFLHLAPASNpr-------------------------------vfLqaigrpiRsg-----s 590  Ectocarpus si...
XP_002947308  738 PISR----GLEDVY-GLLAFLGVRPWTErr-------------------------------wwSrcvqrpaEac-----d 776  Volvox carter...
NP_009672     353 PLQN----RIGEMY-SLIRFLNINPFTKyfctkcdcaskdwkftdrmhcdhcshvimqhtnffNhfmlkniQkfgvegpg 427  Saccharomyces...
P41447        188 PIHN----KHWDMY-SMINFLQCRPFNNpr-------------------------------vwK-------Mlnk----n 220  Autographa ca...

3MWY_W        441 eEYIHDLHRRIQ------P----------------------FILRRLKKDV--EKSLPSKTERILRVELSDVQTEYYK-- 488  baker's yeast
P05807        223 ------LVSKLGglcsyiV----------------------NNEFSIFDDVegSASFAKKTVLMRYVNMSKKQEEIYQka 274  Vaccinia viru...
P24486        233 ------VRETLLgicsykR----------------------LIEADSLTDTnyIDGYAKKSIFYHNIIMSDEQSKLYNma 284  Choristoneura...
XP_004935641  896 -KNSQPLYSLIA------K----------------------IMWRSAKKDVidQIQIPPQTENIHWLHFSPVERHFYHrq 946  chicken
NP_001045418  851 eDGRSRLLQLLQ------R----------------------TMISARKQDL---KNIPPCIKKITFLDFSEGHAKSYN-- 897  Japanese rice
XP_001743850 1112 tDSVWRLAQMLQ------R----------------------CMVRHSKLET--MRNVPRPVCETILLPLQHHEWRSYNtl 1161 Monosiga brev...
CBJ27911      591 dAGLARLRVLMK------S----------------------VCLRRTKSVL--SGKLPPKVVEIHRVQMDDGHREAYN-- 638  Ectocarpus si...
XP_002947308  777 pEGRRLLLHLLR------PsravgdcaagsggggggggdggLMWRSAKRDVesELGLPPQSTHLRHLRLNAVELHFYNrr 850  Volvox carter...
NP_009672     428 lESFNNIQTLLK------N----------------------IMLRRTKVERadDLGLPPRIVTVRRDFFNEEEKDLYR-- 477  Saccharomyces...
P41447        221 nDSTNRIKSIIK------K----------------------IVLKRDKSEI--SSNIPKHTVEYVHVNFNEEEKTLYD-- 268  Autographa ca...

3MWY_W        489 ----------NILTKNYSALTAGAkgg--------------hfsLLNIMNELKKASNHPYLF 526  baker's yeast
P05807        275 klaeiktgisSFRILRRMATTFTFdsfperqnrdpgeyaqeiatlyndfknslrdrefsksa 336  Vaccinia virus WR
P24486        285 erydyktelgGLKTMRRLISSFAFydlkikgdldnveynemikrKLAEFSEFTKNINFSKAF 346  Choristoneura biennis entomopox...
XP_004935641  947 hevccqdalaKLRKISDWTLKLSSldrr------------tvtsILYPLLRLRQACCHPQAV 996  chicken
NP_001045418  898 --------------------------------------------------ELAVTIRRNILM 909  Japanese rice
XP_001743850 1162 lsflrgnivlTSLVGNEISGKQDS--------------------ILESPRHLREAMENLRIi 1203 Monosiga brevicollis MX1
CBJ27911      639 ----------TLFNSARAAFKAALadgeaev-------msqyasVLECLLRLRQVCCAESLV 683  Ectocarpus siliculosus
XP_002947308  851 hqdcatkaraVLPPRVVAAMESGR--------------------LLGYGTEEQQDQQQDQMT 892  Volvox carteri f. nagariensis
NP_009672     478 ----------SLYTDSKRKYNSFVeegvvl---------nnyanIFTLITRMRQLADHPDLV 520  Saccharomyces cerevisiae S288c
P41447        269 ----------KLKCESEEAYVKAVaarenenal---srlqqmqhVLWLILKLRQICCHPYLA 317  Autographa californica nucleopo...
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