2LLI,2LLI,2LLI


Conserved Protein Domain Family
zf-CCHC
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pfam00098: zf-CCHC (this model, PSSM-Id:278525 is obsolete and has been replaced by 395050)
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Zinc knuckle
The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.
Links
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Statistics
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PSSM-Id: 278525
Aligned: 82 rows
Threshold Bit Score: 26.3337
Created: 10-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2LLI_A       5 PKCNNCSQRGHLKKDCPH 22   Saccharomyces cerevisiae S288c
Q04095     507 gLCYTCGSPGHYQAQCPK 524  Rous sarcoma virus (strain Schmidt-Ruppin A)
P91223     254 GVCFKCGSMEHSIHECKK 271  Caenorhabditis elegans
Q8S479     283 RSCFKCGKIGHFIANCPd 300  Zea mays
O01836     202 NTCFNCKKYGHRATECSA 219  Caenorhabditis elegans
P34689     242 MKCFNCKGEGHRSAECPE 259  Caenorhabditis elegans
P34689     158 NNCFNCQQPGHRSSDCPE 175  Caenorhabditis elegans
O92815     501 NTCFFCKQPGHWKADCPN 518  Walleye dermal sarcoma virus
P91223     229 SACFHCREPGHRLADCPK 246  Caenorhabditis elegans
NP_492281  135 kVCYTCGSEEHVSSICPE 152  Caenorhabditis elegans
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