2NPS


Conserved Protein Domain Family
SNARE_syntaxin12

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cd15876: SNARE_syntaxin12 
Click on image for an interactive view with Cn3D
SNARE motif of syntaxin 12
Syntaxin 12 (STX12, also known as STX13 and STX14) forms a complex with SNAP25 (Qb/Qc) or SNAP29 (Qb/Qc) and VAMP2 or VAMP3 (R-SNARE) and plays a role in plasma membrane to early endosome transport. Syntaxin 12 is a member of the Qa subgroup of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins, which consist of coiled-coil helices (called SNARE motifs) which mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complexes mediate membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle.
Statistics
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PSSM-Id: 277229
Aligned: 5 rows
Threshold Bit Score: 111.678
Created: 5-Apr-2012
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 45 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # ## ###### ### ## ### ## ### ## ###### ###### ###### ###         
2NPS_B         1 GSMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67  Norway rat
XP_001232002 179 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDMIDSIEANVESAEVHVERASEQLQRAAYYQKKS 245 chicken
ACO51925     174 IKERESAIKKLEADILDVNQIFKDLAVMIHDQGEMIDSIEANVESAEVHVERGTEQLQRAAYYQKKS 240 bullfrog
AAH71327     174 IKERETAIRQLESDILDVNQIFKDLAVMIHDQGEMIDSIEANVESAEVHVERGAEQLQRAAQYQQKS 240 zebrafish
AAC18967     174 IKERETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 240 Norway rat

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