2YSM


Conserved Protein Domain Family
PHD2_KMT2C

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cd15594: PHD2_KMT2C 
Click on image for an interactive view with Cn3D
PHD finger 2 found in Histone-lysine N-methyltransferase 2C (KMT2C)
KMT2C, also termed myeloid/lymphoid or mixed-lineage leukemia protein 3 (MLL3) or homologous to ALR protein, is a histone H3 lysine 4 (H3K4) lysine methyltransferase that functions as a circadian factor contributing to genome-scale circadian transcription. It is a component of a large complex that acts as a coactivator of multiple transcription factors, including the bile acid (BA)-activated nuclear receptor, farnesoid X receptor (FXR), a critical player in BA homeostasis. The MLL3 complex is essential for p53 transactivation of small heterodimer partner (SHP). KMT2C is also a part of activating signal cointegrator-2 (ASC-2)-containing complex (ASCOM) that contains the transcriptional coactivator nuclear receptor coactivator 6 (NCOA6), KMT2C and its paralog MLL4. The ASCOM complex is critical for nuclear receptor (NR) activation of bile acid transporter genes and is down regulated in cholestasis. KMT2C contains several plant homeodomain (PHD) fingers, two extended PHD (ePHD) fingers, Cys2HisCys5HisCys2His, an ATPase alpha beta signature, a high mobility group (HMG)-1 box, a SET (Suppressor of variegation, Enhancer of zeste, Trithorax) domain and two FY (phenylalanine tyrosine)-rich domains. This model corresponds to the second PHD finger.
Statistics
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PSSM-Id: 277069
Aligned: 7 rows
Threshold Bit Score: 83.0643
Created: 16-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #           #  #    #  #              #  #
2YSM_A         56 VCQNCKQSGEDsKMLVCDTCDKGYHTFCLQPVMkSVPTNGWKCKNC 101  human
XP_004915561   22 VCQNCKHSGDDnQMLVCDTCDKGYHTFCLQPVMdSVPTNGWKCKNC 67   western clawed frog
ETE66201      101 VCQNCKQSGEDnKMLVCDTCDKGYHTFCLQPVMdSVPTNGWKCKNC 146  king cobra
ELT96955      268 ICQTCRQPGDDnKMLVCDTCDKGYHIFCLRPVMtTIPKNGWKCKVN 313  Capitella teleta
EKC24431     1878 VCQMCRQPGEDsKMLVCDTCDKGYHTFCLKPVMtAIPKNGWKCKNC 1923 Pacific oyster
XP_003724175  444 ICQTCRQPGDDnKMLVCDTCDKGYHTFCLKPAMiTIPKNGWKCKTC 489  purple urchin
XP_006822314  428 ICQTCRQPGDDnKMLVCDTCDKGYHTFCLRPVMqTIPKNGWKCKNC 473  Saccoglossus kowalevskii

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