2QIC,2G6Q


Conserved Protein Domain Family
PHD_ING1_2

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cd15584: PHD_ING1_2 
Click on image for an interactive view with Cn3D
PHD finger found in inhibitor of growth protein 1 (ING1) and 2 (ING2)
ING1 is an epigenetic regulator and a type II tumor suppressor that impacts cell growth, aging, apoptosis, and DNA repair, by affecting chromatin conformation and gene expression. It acts as a reader of the active chromatin mark, the trimethylation of histone H3 lysine 4 (H3K4me3). It binds and directs Growth arrest and DNA damage inducible protein 45 a (Gadd45a) to target sites, thus linking the histone code with DNA demethylation. It interacts with the proliferating cell nuclear antigen (PCNA) via the PCNA-interacting protein (PIP) domain in a UV-inducible manner. It also interacts with a PCNA-interacting protein, p15 (PAF). Moreover, ING1 associates with members of the 14-3-3 family, which is necessary for cytoplasmic relocalization. Endogenous ING1 protein specifically interacts with the pro-apoptotic BCL2 family member BAX and colocalizes with BAX in a UV-inducible manner. It stabilizes the p53 tumor suppressor by inhibiting polyubiquitination of multi-monoubiquitinated forms via interaction with and colocalization of the herpesvirus-associated ubiquitin-specific protease (HAUSP)-deubiquitinase with p53. It is also involved in trichostatin A-induced apoptosis and caspase 3 signaling in p53-deficient glioblastoma cells. In addition, tyrosine kinase Src can bind and phosphorylate ING1 and further regulates its activity. ING2, also termed inhibitor of growth 1-like protein (ING1Lp), or p32, or p33ING2, belongs to the inhibitor of growth (ING) family of type II tumor suppressors. It is a core component of a multi-factor chromatin-modifying complex containing the transcriptional co-repressor SIN3A and histone deacetylase 1 (HDAC1). It has been implicated in the control of cell cycle, in genome stability, and in muscle differentiation. ING2 independently interacts with H3K4me3 (Histone H3 trimethylated on lysine 4) and PtdIns(5)P, and modulates crosstalk between lysine methylation and lysine acetylation on histone proteins through association with chromatin in the presence of DNA damage. It collaborates with SnoN to mediate transforming growth factor (TGF)-beta-induced Smad-dependent transcription and cellular responses. It is upregulated in colon cancer and increases invasion by enhanced MMP13 expression. It also acts as a cofactor of p300 for p53 acetylation and plays a positive regulatory role during p53-mediated replicative senescence. Both ING1 and ING2 contain an N-terminal ING domain and a C-terminal plant homeodomain (PHD) finger.
Statistics
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PSSM-Id: 277059
Aligned: 13 rows
Threshold Bit Score: 86.3467
Created: 12-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteH3K4me3 binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # #          #    #     #  #            #  #
2QIC_A        13 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 57  human
2G6Q_A        13 YCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 57  house mouse
XP_002741322 201 YCLCNQVSYGEMIGCDNDECVIEWFHFNCVGLTSKPKGKWYCPKC 245 Saccoglossus kowalevskii
XP_002596469 206 YCLCNQVSYGEMIGCDNEECEIEWFHFDCVSLHNKPKGKWYCPKC 250 Florida lancelet
EFX75443     251 YCLCDQVSFGEMIGCDNDLCPIEWFHFSCVQLTTKPKGKWYCPRC 295 common water flea
ELU08926     229 YCLCDRVSYGEMIGCDNDSCAIEWFHFDCIQLSHKPKGKWYCPNC 273 Capitella sp. I Grassle & Grassle, 1976
XP_002399429 260 YCLCEQVSFGEMICCDNEECAIEWFHFSCVALTTKPKGRWYCPRC 304 black-legged tick
NP_650656    360 YCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWFCPNC 404 fruit fly
ERG83457     237 YCLCEQISFGEMIGCDNEKCLVEWFHFECVQLKVKPKGKWYCPMC 281 pig roundworm
NP_001082173 275 YCLCNQVSFGEMIGCDNDECTIEWFHFSCVGLTYKPKGKWYCPDC 319 African clawed frog
ESO93661     199 YCLCDQVSYGEMIGCDNDKCEIEWFHFNCVNLSHKPKGKWYCPKC 243 owl limpet
XP_002124893 288 YCVCDQVSFGQMIGCDNKKCPIEWFHFSCVGLTLKPKGRWYCPDC 332 vase tunicate
NP_001035446 242 YCLCEQVSYGEMIGCDNDECTIEWFHFSCVDLHHKPKGKWYCPKC 286 zebrafish

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