2LRI


Conserved Protein Domain Family
PHD2_AIRE

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cd15540: PHD2_AIRE 
Click on image for an interactive view with Cn3D
PHD finger 2 found in autoimmune regulator (AIRE)
AIRE, also termed autoimmune polyendocrinopathy candidiasis ectodermal dystrophy (APECED) protein, functions as a regulator of gene transcription in the thymus. It is essential for prevention of autoimmunity. AIRE plays a critical role in the induction of central tolerance. It promotes self-tolerance through tissue-specific antigen (TSA) expression. It also acts as an active regulator of chondrocyte differentiation. AIRE contains a homogeneously-staining region (HSR) or caspase-recruitment domain (CARD), a nuclear localization signal (NLS), a SAND (for Sp100, AIRE, nuclear phosphoprotein 41/75 or NucP41/75, and deformed epidermal auto regulatory factor 1 or Deaf1) domain, two plant homeodomain (PHD) fingers, and four LXXLL (where L stands for leucine) motifs. This model corresponds to the second PHD finger that may play a critical role in the activation of gene transcription.
Statistics
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PSSM-Id: 277015
Aligned: 6 rows
Threshold Bit Score: 47.2037
Created: 15-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteputative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #         #  #    #  #              #  #
2LRI_C        14 RCGVCGDG-TDVLRCTHCAAAFHWRCHFPagtsrpgtgLRCRSC 56  human
NP_001103484 402 ACGICYLTrGELITCPQCLQAYHALCNFPng------rTRCRNC 439 zebrafish
XP_003770405 414 QCGVCQGS-KDVLHCAQCSRAFHWHCHFPddsnstggiIKCKLC 456 Tasmanian devil
XP_003975629 365 ECGVCRQAeGALTRCLQCLGSFHTHCHFPkg------rSICLSC 402 torafugu
XP_006637800 387 SCGVCQQG-GDLHCCSQCLQSFHTHCYFPslsr--sgkMRCKSC 427 spotted gar
XP_007667891 407 RCGICRGGgGDLLYCPQCFQPFHRHCHFSsgsdrtggiMKCKFC 450 platypus

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