1EXT,1D0G,1JMA,1NCF,2HEV,2UWI,3ALQ,3IJ2,3K51,3QBQ,3QD6,3QO4,3THM


Conserved Protein Domain Family
TNFRSF

?
cd00185: TNFRSF 
Click on image for an interactive view with Cn3D
Tumor necrosis factor receptor superfamily (TNFRSF)
Members of TNFR superfamily (TNFRSF) interactions with TNF superfamily (TNFSF) ligands (TNFL) control key cellular processes such as differentiation, proliferation, apoptosis, and cell growth. Dysregulation of these pathways has been shown to result in a wide range of pathological conditions, including autoimmune diseases, inflammation, cancer, and viral infection. There are 29 very diverse family members of TNFRSF reported in humans: 22 are type I transmembrane receptors (single pass with the N terminus on extracellular side of the cell membrane) and have a clear signal peptide; the remaining 7 members are either type III transmembrane receptors (single pass with the N terminus on extracellular side of the membrane but no signal sequence; TNFR13B, TNFR13C, TNFR17, and XEDAR), or attached to the membrane via a glycosylphosphatidylinositol (GPI) linker (TNFR10C), or secreted as soluble receptors (TNFR11B and TNFR6B). All TNFRs contain relatively short cysteine-rich domains (CRDs) in the ectodomain, and are involved in interaction with the TNF homology domain (THD) of their ligands. TNFRs often have multiple CRDs (between one and six), with the most frequent configurations of three or four copies; most CRDs possess three disulfide bridges, but could have between one and four. Localized or genome-wide duplication and evolution of the TNFRSF members appear to have paralleled the emergence of the adaptive immune system; teleosts (i.e. ray-finned, bony fish), which possess an immune system with B and T cells, possess primary and secondary lymphoid organs, and are capable of adaptive responses to pathogens also display several characteristics that are different from the mammalian immune system, making teleost TNFSF orthologs and paralogs of interest to better understand immune system evolution and the immunological pathways elicited to pathogens.
Statistics
?
PSSM-Id: 276900
Aligned: 113 rows
Threshold Bit Score: 41.8111
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
CRD2
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:CRD2 [structural motif]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                   ###    #######    #####      ####                    
1EXT_A        19 CCTKCHKGTYLYNdCpgpg-qdtDCRECESg---SFTASENhl-rHCLSC------SKCRkem----------------- 70   human
Q93038        47 CCRGCPAGHYLKApCtepc-gnsTCLVCPQd---TFLAWENhhnsECARC------QACDeqa----------------- 99   human
NP_001552     27 PCSNCPAGTFCDNnRn------qICSPCPPn---SFSSAGGq--rTCDIC------RQCKgv------------------ 71   human
AAI15176      40 CCTSCKPGNRLVKrCgyd--paeLCKPCEPg---TYITGTDf---SCDICt-----QCIGi------------------- 87   zebrafish
EEN65211     628 CPSGCDPGTTIVTqCgfg--ipqTCRPCEPtpgkTCASGIEr---SCVLC------NIYGr------------------- 677  Florida lancelet
NP_038777      9 LPQILVLGFGLVLmRaaageqapGTSPCSSg--sSWSADLDkc-mDCASCparphsDFCLgcaaappahfrllwpilgga 85   house mouse
P26842        39 CCQMCEPGTFLVKdCdqhr-kaaQCDPCIPg--vSFSPDHHtr-pHCESC------RHCNs------------------- 89   human
XP_005724588  30 CCNKCPPGTYVEEfCsdr--qqtACKACPDg---HFSQLPNlf-dRCEKC------QTCQh------------------- 78   Pundamilia nye...
XP_007070274  81 CCQKCPAGTFMRApCtshg-ydtACESCPHg---TYLSFQNle-rKCRKC------SECHa------------------- 130  green sea turtle
XP_007550901  38 CCKKCEAGTYMKDfCsqt--retVCIACPEg---TYAEYINaf-dHCEKC------PSCQq------------------- 86   Amazon molly
Feature 1             #######     ###                           
1EXT_A        71 ---gqVEISSCTvd-rdTVCGCRKnqyrhyw-----senlfqCFNCS 108  human
Q93038       100 ---sqVALENCSav-adTRCGCKPgwfvecqvsqcvssspfyCQPCL 142  human
NP_001552     72 ----fRTRKECSst-snAECDCTPgfhc----------lgagCSMCE 103  human
AAI15176      88 ----qFVAKNCTss-sdTVCGCKPgfrc----------gdakCSHCV 119  zebrafish
EEN65211     678 -----TVKEECNiynqtRCGGCREgfyenldd--pkigntryCRKCT 717  Florida lancelet
NP_038777     86 lslvlVLALVSSfl-vwRRCRRREkfttpie-----etggegCPGVA 126  house mouse
P26842        90 ----gLLVRNCTit-anAECACRNgwqc----------rdkeCTECD 121  human
XP_005724588  79 ----yAVKCTSTt---nATCSCAAgflc----------snsiCSTCV 108  Pundamilia nyererei
XP_007070274 131 -----QGSEEDA-----QCGDCQPgfyl----------egseCRACA 157  green sea turtle
XP_007550901  87 -----GFAENCTkt-tkGNCQCRPgflc----------sdksCSLCE 117  Amazon molly

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap