3ZFD,3ZFC


Conserved Protein Domain Family
KISc_KIF4

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cd01372: KISc_KIF4 
Click on image for an interactive view with Cn3D
Kinesin motor domain, KIF4-like subfamily
Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Statistics
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PSSM-Id: 276823
Aligned: 16 rows
Threshold Bit Score: 468.734
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingmicrotubule
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:interaction site for Mg ADP, ATP hydrolysis drives motor function
  • Structure:3ZFD; Mus musculus Kif4 Motor Domain with bound Mg-AMP-PNP, contacts 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                      
3ZFD_A       8 IPVRVALRCRPLVskeik-egcqTCLSFVPge--pQVVVgn--------------------------dKSFTYDFVFDPs 58   house mouse
NP_060111    8 SSVRVAVRIRPQLakeki-egchICTSVTPge--pQVFLgk--------------------------dKAFTFDYVFDId 58   human
BAD16507     9 CCVKVAVHVRPLIgdekl-qgckDCVSVVSgk--pQVQIg---------------------------sHSFTFDHVYGSs 58   Japanese rice
NP_199593   10 CSVKVAVHIRPLIgderi-qgcqDCVTVVTgk--pQVQIg---------------------------sHSFTFDHVYGSs 59   thale cress
AAF63388    12 SSVRVAVRIRPQNsreli-dmcrICTTVTLge--pQIFLgs--------------------------dKAFTFDYVFDTn 62   fruit fly
AAR39438    12 NCVRVALRVRPLSkkeea-ersmEVVKYVDge--pQVIMgd-------------------------nnQTFTFDYVFNGk 63   Dictyostelium di...
EAK84387   316 TSVQVAVRIRPVTnadqsnipprWQKSILSatsntSVTVepgsappagagagagastasssaasrdkrQAFSFDRVFSPa 395  Ustilago maydis 521
CAD21208    53 TAVRVAVRVRPPLgpddp-gydlVPQRFQRsm--vQVQGetgvai-----------------dspqgrKLFVFDRVFGPe 112  Neurospora crassa
NP_597346    6 STIQVEVRVNPRLd---------NAIESTPt----ALTVg---------------------------tKTYTFSKVHLT- 44   Encephalitozoon ...
BAC77723    14 SSIQVAVRVRPLNprerd-eglrACVNFDEet--rQVVLsavdkntl-------------lqlrgataKGYAFDRRYGQd 77   Chlamydomonas re...
Feature 1                                    #  # ####                                         
3ZFD_A      59 -TEQEEVFNTAVaPLIKGVFKGYNATVLAYGQTGSGKTYSMGGaytae---------qehdsAIGVIPRVIQLLFKEINk 128  house mouse
NP_060111   59 -SQQEQIYIQCIeKLIEGCFEGYNATVFAYGQTGAGKTYTMGTgfdvn----------iveeELGIISRAVKHLFKSIEe 127  human
BAD16507    59 gTPSAAMFEECVaPLVDGLFQGYNATVLAYGQTGSGKTYTMGTack-------------egsHIGIIPRAMATLFDKIDk 125  Japanese rice
NP_199593   60 gSPSTEMYEECAaPLVDGLFQGYNATVLAYGQTGSGKTYTMGTgcg-------------dssQTGIIPQVMNALFTKIEt 126  thale cress
AAF63388    63 -SNQCDIYSDCVeKLVDSTLHGYNATVLAYGQTGSGKTYTMGTgfdhes-------essdsvQLGIIPRAVRHIFSGIEq 134  fruit fly
AAR39438    64 -SRQQEIFDDCVaNLVDCLFEGYNSTILAYGQTGSGKTFTMGTtstig----------ipteELGVIPRVIDFIYDKIDr 132  Dictyostelium di...
EAK84387   396 -DGQSEIFSVAE-PLIDRFIEGYNVTILAYGQTSSGKSYTMGTaanddvdyealvagrspdpQMGIIPRAVARIFSAMRq 473  Ustilago maydis 521
CAD21208   113 -VDQEGVWEYLS-DCVNAFTQGYNVSLLAYGQSGAGKSYTMGTagpdv---------qedleAMGVIPRAAIALFEKLDg 181  Neurospora crassa
NP_597346   45 -TSQTQMYNRSVrHLTELFLEGYNCTVMAYGQTGSGKTYTMGMth---------------edMTGIVPQSLKHIFKACQ- 107  Encephalitozoon ...
BAC77723    78 -VTSDAIYDDCVaQLVEAVFKGYNATVLAYGQTGSGKTHTMAGgagi-----------hgvvEQGITPRVIQHIFALAEa 145  Chlamydomonas re...
Feature 1                                                                                      
3ZFD_A     129 ksd------------------------------fefTLKVSYLEIYNEEILDLLcssr------------------ekat 160  house mouse
NP_060111  128 kkhiaik---------------------nglpapdfKVNAQFLELYNEEVLDLFdttrdid-------------akskks 173  human
BAD16507   126 lkn-----------------------------qvefQLRVSFIEILKEEVRDLLdpataavgklengnghatklsvpgkp 176  Japanese rice
NP_199593  127 lkq-----------------------------qiefQIHVSFIEIHKEEVQDLLdpctvnksdtnntghvgkvahvpgkp 177  thale cress
AAF63388   135 legsstseh------------------paaggspqfSLAVQYIELYNEDIFDLLdpfn-------------------kns 177  fruit fly
AAR39438   133 kkd-----------------------------thqlVLKVSFLELYNEEIRDMLnpyp-------------------tag 164  Dictyostelium di...
EAK84387   474 tkss----------------------------ttqyTAKVSFIEIYNEDLIDLLgdavd----------------gdarp 509  Ustilago maydis 521
CAD21208   182 sspksqgaaskrssmsqlrapsrvamlqpsnidkdwKLTATYVEIYNETLRDLLipehip---------------qherg 246  Neurospora crassa
NP_597346  108 ------------------------------------EIDCVFIEVYNEEVIDLFskh---------------------km 130  Encephalitozoon ...
BAC77723   146 irkke-------------------------kpgektQIAAYGLELYNEDLRDLAlaggrdesakgwdgkggnpsalklqe 200  Chlamydomonas re...
Feature 1                                                                                      
3ZFD_A     161 QINIREdpkegIKIVGLTEKTVLVASDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISIEqrkkn------------- 227  house mouse
NP_060111  174 NIRIHEdstggIYTVGVTTRTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCqtrvcpqidadnatd--- 250  human
BAD16507   177 PVQIREasngvITLAGSTEVHVTTQKEMTACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEqmrkadpimtld------ 250  Japanese rice
NP_199593  178 PIQIREtsngvITLAGSTEVSVSTLKEMAACLDQGSVSRATGSTNMNNQSSRSHAIFTITVEqmrkintdspen------ 251  thale cress
AAF63388   178 NFKIHEdasgqITISGASIKPIYQPHDALKYLQQGALARTTASTKMNDQSSRSHALFTIFVRrqrlltpsd--------- 248  fruit fly
AAR39438   165 GLPIREksngeVYIPGLVEQIVRSRQQMEEALIRGSQSRTTGSTLMNSHSSRSHAIFSIIVEqtpinspvtssstsstst 244  Dictyostelium di...
EAK84387   510 HVQIREgkngqIIWSGLREVKVANVAQVMTYLLQGSSVRRTNETDMNAQSSRSHAIFSITLTqkkwvgsgpppsaappss 589  Ustilago maydis 521
CAD21208   247 TVTIREdvkgnIILTGLQQVEVNSVDDLMNVLAQGSALRQTDATAINARSSRSHAVFSLNLVrkgakgptaptdrrm--- 323  Neurospora crassa
NP_597346  131 PLSLREmn-geVTIAGATEVTLRSYEDGIEALKKGSLERTTKSTNMNSKSSRSHAIFTLFHRkevn-------------- 195  Encephalitozoon ...
BAC77723   201 RPVGKEgr-vvPEVVGVTERVVSSAEELTNFFNQCVDNRSTSSTKLNDRSSRSHAIFTITIQrtivevlnelg------- 272  Chlamydomonas re...
Feature 1                                                                                      
3ZFD_A     228 ------------------------------------------------------------------------dknssFRS 235  house mouse
NP_060111  251 --------------------------------------------------------------nkiisesaqmnefetLTA 268  human
BAD16507   251 ------------------------------------------------------------------gmpieemnedyLCA 264  Japanese rice
NP_199593  252 ------------------------------------------------------------------gayngslkeeyLCA 265  thale cress
AAF63388   249 --------------------------------------------------------------------nvpdndletLTS 260  fruit fly
AAR39438   245 ssssddkkqskgkkkkksssp-----------------dslspnkdddssimidedeeddeededddimsmdernpsIRS 307  Dictyostelium di...
EAK84387   590 fggrstpaarsvsslsrasgipvagrvaspslgrrtpsgipalggrnssislrpasghgdvadestssssadgewvtVSS 669  Ustilago maydis 521
CAD21208   324 --------------------------------------------------------------smpleamsgteamvtTDS 341  Neurospora crassa
NP_597346  196 --------------------------------------------------------------------------gsfVTS 201  Encephalitozoon ...
BAC77723   273 ------------------------------------------------------------------sdlkakvrtseFTS 286  Chlamydomonas re...
Feature 1           #                                                                          
3ZFD_A     236 KLHLVDLAGSERQKKTKAEGDRLREGININRGLLCLGNVISALGDdkk----------------gnFVPYRDSKLTRLLQ 299  house mouse
NP_060111  269 KFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDksk---------------ratHVPYRDSKLTRLLQ 333  human
BAD16507   265 KLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDekkr-------------kegaHVPYRDSKLTRLLQ 331  Japanese rice
NP_199593  266 KLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDekkr-------------kdgaHVPYRDSKLTRLLQ 332  thale cress
AAF63388   261 KFHFVDLAGSERLKRTQATGERAREGISINCGLLALGNCISALGDksk---------------ralHVPYRDSKLTRLLQ 325  fruit fly
AAR39438   308 MFHFVDLAGSERVKKTKAEGQRLKEGININGGLLALGNVISALGDtrrat------------tkpkHIPYRDSKLTRMLQ 375  Dictyostelium di...
EAK84387   670 KFHFVDLAGSERLKRTAAQGERVKEGISINSGLHALGNVISALGDpaka-------------kratHIPYRDSKLTRLLQ 736  Ustilago maydis 521
CAD21208   342 KMHFVDLAGSERLKNTGAQGERAKEGISINAGLAALGKVISQLSSrqp----------------gaHVSYRDSKLTRLLQ 405  Neurospora crassa
NP_597346  202 KFSFVDLAGSERLKRTLCAGDRVKEGISINSGLLALGNVISALFKks------------------sHVPFRDSKLTRILQ 263  Encephalitozoon ...
BAC77723   287 KLHLVDLAGSERVKRSGVTGKELKEATHINSGLLALGNVIVALAGedrgaegsakketpgvekkkaHVPYRDSKLTRLLQ 366  Chlamydomonas re...
Feature 1                                             
3ZFD_A     300 DSLGgnSHTLMIACVSPADSNLEETLNTLRYADRARKIK 338  house mouse
NP_060111  334 DSLGgnSQTIMIACVSPSDRDFMETLNTLKYANRARNIK 372  human
BAD16507   332 DSLGgnSKTVMIACISPADINAEETLNTLKYANRARNIQ 370  Japanese rice
NP_199593  333 DSLGgnSRTVMIACISPADINAEETLNTLKYANRARNIR 371  thale cress
AAF63388   326 DSLGgnSQTLMIACVSPSDRDFMETLNTLKYANRARNIK 364  fruit fly
AAR39438   376 SSLGgnSKTLMIACVSPADSNFEETLNTLKYAYRARNIM 414  Dictyostelium discoideum
EAK84387   737 DSLGgnAHTLMIACVSPTEYNVSETVNTLQYANRARNIK 775  Ustilago maydis 521
CAD21208   406 DSLGgnAITYMIACVTQAEFHLSETLNTVQYAQRARAIQ 444  Neurospora crassa
NP_597346  264 SCLS--GYVLMIACVSSSHADISETHNTLKYANRAASIE 300  Encephalitozoon cuniculi GB-M1
BAC77723   367 DSLGgnSLTVLISCISPSEADFEETNNTLKYANRACKIK 405  Chlamydomonas reinhardtii

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