Conserved Protein Domain Family
cyc_nuc_ocin

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TIGR03896: cyc_nuc_ocin 
bacteriocin-type transport-associated protein
Members of this protein family are uncharacterized and contain two copies of the cyclic nucleotide-binding domain pfam00027. Members are restricted to select cyanobacteria but are found regularly in association with a transport operon that, in turn, is associated with the production of putative bacteriocins. The models describing the transport operon are TIGR03794, TIGR03796, and TIGR03797.
Statistics
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PSSM-Id: 274839
Aligned: 3 rows
Threshold Bit Score: 499.807
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010996192  14 IDWMVAIGHQREIAAGTTLIQPGKAADFLHILLDGTFSVTIPQPEDNPLtrafaaiegneifgkEIGRLSRGEIMGESPL 93  Nostoc sp. PCC ...
WP_011131505  24 LAWIRDVSVVREITTSCRLIEEGSTPDGLFVVESGAITVCTKQADGGSL---------------SLASLKVGNLVGEMSW 88  Prochlorococcus...
WP_011128965  15 FQWAQVNCESFAVNEEQVLIEEGVATPDLFLLLEGGATVRTALETEDASqd-----------svDLAELSPGQFVGEMSL 83  Synechococcus s...
WP_010996192  94 IGTRPPATTIKAVEKSLVMSIPVGELAAKLQQDVGFAAHFYRAIAIIISDRIQNTIHQLGRRNLAQSQHLRDVLFILGEL 173 Nostoc sp. PCC ...
WP_011131505  89 LEERPAVASIDAGPGSRLLQIPREALESINQSEAFICHLLYRLIAEKLALQVQGQNIWVHRIAGTDQEPLRKVLVLFAEL 168 Prochlorococcus...
WP_011128965  84 LEDRLPVATVIAQPNSRWIRVRYSDLIAAIASDKALASSTYQVFAGKLALQLSRQNAFIHRWPGQDIEPLRKVLLVFGEW 163 Synechococcus s...
WP_010996192 174 HDSDIDWMMASGTPQKIPANTILIHEQGTVDALYILLYGKMSLSISPDEqnplarafaaiegheiPGREIAKLSKGEIIG 253 Nostoc sp. PCC ...
WP_011131505 169 EEKDVAWIARSGKFKRLVAGDVLLQEGDNVPGLYLLLAGEARISITENG----------------SWQSVGSSRRGELLG 232 Prochlorococcus...
WP_011128965 164 NELDVAWLEKTGEKVDLSTGTAFIKEGEALDRLYIVLDGEAEVMINVEG----------------ASTTVGSSRRGEILG 227 Synechococcus s...
WP_010996192 254 ETPFIDGSLP--PATVKAIENSVVLAIPRQQLAAKLQQDVGFASRFYRVIASLLSQRSQAMVSQLGYGRRVYsrgqsLRE 331 Nostoc sp. PCC ...
WP_011131505 233 ELTMLNPQAAgaTANVDTVTGLELLVLDKEELSMTLNADPRLAKRFYKGIARMLSQRSRDQLLSRGFAEASR-----IAE 307 Prochlorococcus...
WP_011128965 228 EMSFLNSDEQa-TATVQAREAMVLLAVDKTSIRQQLTVDLAFAERFYRSLAVLLSHRCRDQMMSRGMAAQAL-------- 298 Synechococcus s...
WP_010996192 332 GLEYDDELDINTLDRMAIAGKRFDWMLGRL 361 Nostoc sp. PCC 7120
WP_011131505 308 ELIDNEQLGLDQLSAISSAGLRFDWLCRQF 337 Prochlorococcus marinus
WP_011128965 299 ---ALEELDLTTLGIVSTAGRRFEWLCSEV 325 Synechococcus sp. WH 8102
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