1RWI,3FVZ,1Q7F


Conserved Protein Domain Family
NHL

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cd05819: NHL 
Click on image for an interactive view with Cn3D
NHL repeat unit of beta-propeller proteins
The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Statistics
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PSSM-Id: 271320
Aligned: 159 rows
Threshold Bit Score: 97.3893
Created: 26-Apr-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 33 residues -Click on image for an interactive view with Cn3D
Feature 1:NHL repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #######  ############    #########               #####            
1RWI_A        12 QTVLPftgidfrlsPSGVAVDs-AGNVYVTSEGMYg---RVVKLATGStg------------tTVLPFng-------lyQ 68   Mycobacterium ...
WP_018160446 364 STVPItgl----nfPVGIDSTr-SGTLYIADTSNN----RIVVFDTTTrr------------qQVLGLta-------lrE 415  Smaragdicoccus...
WP_021253213  81 KQEESlq------fPSGIVSE--GKSVVVADTRNQ----VIRRLDVNGrilat------igmrNTKGWkdgndvqaqfdQ 142  Paenibacillus ...
XP_005784642  52 GDCGAal-----fnPCGLTASa-NGEVYVADTGHH----RICVLKQGGmrvl--------agsGARGFadgagqdaafaH 113  Emiliania huxl...
WP_005546108  79 ANKQVerl----qfPTGIAAGe-NQSIIVTDTRNH----VLRRLDAEGritat------igmiNKQGWedgeqaqvqfdQ 143  Paenibacillus ...
WP_017756672  49 GAATIak-----fnGPSVAIEagDGSFYVSDTENHrirlVTKDNQVKTfagttsqtdeygfavGGFRDgnvgn--amfnE 121  Bacillus sp. ZYK
WP_010277507  56 GDKAEasf----rhPSGLAAAp-DGTLYVSDTKSHll-rRLDHSGVSLlagssfl-qedgqvvDALGDgkgel--ssfsE 126  Paenibacillus ...
YP_004640068  58 GTGLEasf----rvPAGLAVLp-DGTAAVSDSRNGvi-rKLTGGRVDVlagvfyrkddkgypvGGLLDgaana--slfqE 129  Paenibacillus ...
WP_010491376  90 RKLSQgt------vSTFAGAA--YKQDSKGFPVGAll-dGKSDASLFNepq----------glAADANgnvyv--adsgN 148  Paenibacillus ...
ETT66560      58 GAASEasf----rmPQGIAVLk-DGSVLVADTRNHli-rQVKNGEVSTyaglmldgedygtpeGAWHDgaked--avfnG 129  Paenibacillus ...
Feature 1                                                                                        
1RWI_A        69 PQGLAVDgAGTVYVTDf-NNRVVTLAAGSNn--qTVLPFDGLn----------yPEGLAVDtqgAVYVADrgNNRVVKLA 135  Mycobacterium ...
WP_018160446 416 PAAVAVGtDGTVFVADtkNDRVVSWDGHTQ----QTVDLGPLr----------rPSGVATSasgELFVTDtgNRRVLAWR 481  Smaragdicoccus...
WP_021253213 143 PIGMAADkKGNLYVADagNHIIRKIDRNGNvstvAGDGIPGWkdgeagqarfysPRAIAVAddgSIYVADalNHVIRRID 222  Paenibacillus ...
XP_005784642 114 PCGLAIDsEGTLYVADcgNHRIRRVTMDGVvttiAGNGAAAHrdgqgrvasfynPCGIAIDsndVLYVADysNNCVRVVS 193  Emiliania huxl...
WP_005546108 144 PTGLAADkKGNLYVADagNHVIRKIDGAGKvttvAGDGIPGWkdgaagtarfhtPRAIAVAddgAIYVTDslNHVIRRID 223  Paenibacillus ...
WP_017756672 122 PKGLALSaSGVLYVADagNNAVRAIDNGVVh---TVTSDLQG------------PSDIAITesgDLIVSDtlNHRIVKVT 186  Bacillus sp. ZYK
WP_010277507 127 PAGLALDhNGNLFVADkgNHAVRKVDAEGNvttyAGQGVLGHkdgtaeeslfyaPEDVVVAsdgTVYVADtlNHVIRKID 206  Paenibacillus ...
YP_004640068 130 PLGLSAGpDGSLYVADagNHAIRRIDAKGNvttvAGSGRLGAkdgkgaaaefyrPGDVAAApdgTLYVADtlGHTIRRIS 209  Paenibacillus ...
WP_010491376 149 HAIRKIDtAGQVSTVAgnGLLGRKDGEGKD----ALFYRPTD------------VAVAADG---TLYVADslNHAIRSIS 209  Paenibacillus ...
ETT66560     130 PSGMDTDlEGNIYIADteNHRIRKISKDGMvttvAGDGIIGNedgigneagfyhPQDVAVAadgTLYVADtlNHLIRQIT 209  Paenibacillus ...
Feature 1                                                                                        
1RWI_A       136 AGSk----------TQTVLPFt---------------gLNDPDGVAVDNs---GNVYVTDt-dNNRVVKLEAes------ 180  Mycobacterium ...
WP_018160446 482 PGE-----------PVRTLPFt---------------gLQGPVGIAVAN----GEVAVSEp-gDGRIVRLGVng------ 524  Smaragdicoccus...
WP_021253213 223 ANG-----------TVTTLTArss-----------rivEYSPGAVTGAGdykdGKLAEAKfnePSGIAMMRDgk------ 274  Paenibacillus ...
XP_005784642 194 RGG-----------VVATLSChed-----------eaaLDAPYGIAVSIf---VSSYHSNs--LAAISPDGQvs------ 240  Emiliania huxl...
WP_005546108 224 AMG-----------MVTTLTArss-----------rivEYSPGSVTGAGdfkdGNLTEAMfnePSGIALMNDgk------ 275  Paenibacillus ...
WP_017756672 187 EQGevsv----lagGRYRNDGdwlvggya-dgqgaaaqFNEPSGLAIAAn---GDIYVADt-gNQRIRKIDSsgnvttva 257  Bacillus sp. ZYK
WP_010277507 207 PEGkvstlnalpqrYIEVFPGeavlagdykdgplqeakFNEPTGLAIDHl---GNLYISDt-gNRVIRYMDLandrvstv 282  Paenibacillus ...
YP_004640068 210 PQGevttltapsrrVVEATPGqvaaagdfadgplaqakFNEPTGIALDAk---GNLYVSDs-gNQRIRYIDLakgtvttv 285  Paenibacillus ...
WP_010491376 210 PSGevktlnalsprVVELFPGqvspagdfadgdlksakFNEPTALVLDAk---GNLIVSDs-gNQRIRYIDLqqgkvttl 285  Paenibacillus ...
ETT66560     210 ADGqvttlnaasdrVVEVIGGyavpagdyadgelstakFNDPTSIAIDHk---GNLYVSDt-gNRVIRYIDLakrtvtta 285  Paenibacillus ...
Feature 1                                                                                        
1RWI_A       181 ----------------nnQVVLPFTdi----------tAPWGIAVDEAgtVYVTEHnt---nQVVKLlags-------tt 224  Mycobacterium ...
WP_018160446 525 -----------------qSVKTGLS-------------EPIGIAFHDSd-LYVAEHgt---nALIRLt------------ 558  Smaragdicoccus...
WP_021253213 275 ----------------laVADTGNQrirvi---dlkqgNVSTIAGSSStaAYTAPNv----qQVLYAsggy------rdg 325  Paenibacillus ...
XP_005784642 241 -----------------vLAGCGAAkhrdgsgkdaafhAPNGLAIDSEgtLYVADSgnhcvrRVTLAgevt-------tl 296  Emiliania huxl...
WP_005546108 276 ----------------laVADTGNQrirli---dlkqgSVSTIAGSSStaGYTLPGv----qRVLYApg----------g 322  Paenibacillus ...
WP_017756672 258 gtg-----agkmtdtsyiVGGYADGdaar-----aqfnFPTGLAFDKEgnLYVADTln---hVIRVItttgnvstvagia 324  Bacillus sp. ZYK
WP_010277507 283 agsvq-lydeanssslyaSGGFSDGhatee----alfmAPRGIAITEEggLVIADSln---hAIRYLfegrvitlagghe 354  Paenibacillus ...
YP_004640068 286 agg----gtaaelkdmyvPGGFSNGaalq-----arlnYPMGIAVTEEggLLIADSqn---hAVRYLfggqlstlagage 353  Paenibacillus ...
WP_010491376 286 agg----gqaatnkelhvQGGFADGsasd-----arfsFPMGLALTEEggLVIADSqn---hAIRYLldgqvstiagaad 353  Paenibacillus ...
ETT66560     286 aglpageepvyangslyaEGGYADGaatq-----arfqSPRGIVVTKDggLVIADSln---hTIRYLvdgyvst-iagvp 356  Paenibacillus ...
Feature 1                                                      
1RWI_A       225 sTVLPft------glNTPLAVAVDs----dRTVYVADRgNDRVVKL 260  Mycobacterium tuberculosis
WP_018160446 559 gLVGStvvd---kvaQGAAGVTVSd----dGTVYLVDSqRNRVVAV 597  Smaragdicoccus niigatensis
WP_021253213 326 aATGSl--------fNNPSGIAITe----eNGIVVADRwNHVVRYI 359  Paenibacillus alvei
XP_005784642 297 aGTGQaams--esqfNSPCGLCVSllpgigPALLITDRsNSCVRYL 340  Emiliania huxleyi CCMP1516
WP_005546108 323 yRDGAasn----sifNSPTGIAITn----eNGIVVADRwNHVVRYI 360  Paenibacillus alvei
WP_017756672 325 sESGNkigseftaqfDRPSDVSVLk----nGKLLVADQmNNKLRMI 366  Bacillus sp. ZYK
WP_010277507 355 aEHGQqdgingynrlNHPQDVQVAa----dGSIIIADAyNNQLRAF 396  Paenibacillus senegalensis
YP_004640068 354 qKMGLldgmegkaglNRPADVAVLg----dGSVLVADSfNNRLRRL 395  Paenibacillus mucilaginosus KNP414
WP_010491376 354 rITGNadgiegsaalHRPMDVAVLa----dGSILAADTyNNKLREV 395  Paenibacillus elgii
ETT66560     357 aQFGQvdginghnllHNPTDVAVLp----nGGLLIADSyNNKIREL 398  Paenibacillus sp. FSL H8-237

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