Conserved Protein Domain Family
SWIM
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pfam04434: SWIM (this model, PSSM-Id:252595 is obsolete and has been replaced by 309540)
SWIM zinc finger
This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.
Links
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Statistics
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PSSM-Id: 252595
Aligned: 88 rows
Threshold Bit Score: 26.2259
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q9C702        628 YQVSMAPKkktrlmgqsndstsgivQLNDTTCTCGEFQK---NKFPCLHALAVCDELK 682  thale cress
Q9RJY5         47 VRIAVDAEtdlelha----pdgivsSAGAIRCGCL-------LAPDCLHRAAAASAAP 93   Streptomyces coelicolor
Q9XAH5         63 ALVTLAPGpsg-----------titSPDQAHCTCL-------LSPRCLHRAAALGAAP 102  Streptomyces coelicolor
O29156         49 FFVVVGKEe---------------yVVEGGFCTCPDFLVnlkGKSPCAHIIAVEVAKI 91   Archaeoglobus fulgidus DSM 4304
Q9CE08         39 EEVSYDLD------------------GAQDSCTCAVFQQ---NHRYCKHIAAIEEYLK 75   Lactococcus lactis subsp. lactis
Q9A1C9         40 YQVQYGAD------------------DEDITCQCDTFH----MKHYCKHIAAVEYFLK 75   Streptococcus pyogenes serotype M1
WP_023396361   43 YSLEDD----------------------LVFCACDFFQ----KRGYCVHLAALEHFLK 74   Streptococcus pneumoniae
WP_010921311   52 YVVQLWAP------------------AGEGTCTCPGFE----KFGACKHQAAVVSAAN 87   Caulobacter vibrioides
WP_042066723   55 VRTQLANGq----------------ALKEAQCTCG-------ASGMCRHRVMLVLSYQ 89   Escherichia coli
EFH79444       84 YRVQLTGG-----------------QASSSRCTCPAAG----HQAVCKHAVAVALCLL 120  Vibrio cholerae MAK 757
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