3S7R


Conserved Protein Domain Family
RRM1_hnRNPAB

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cd12757: RRM1_hnRNPAB (this model, PSSM-Id:241201 is obsolete and has been replaced by 410151)
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RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B) and similar proteins
This subgroup corresponds to the RRM1 of hnRNP A/B, also termed APOBEC1-binding protein 1 (ABBP-1), which is an RNA unwinding protein with a high affinity for G- followed by U-rich regions. hnRNP A/B has also been identified as an APOBEC1-binding protein that interacts with apolipoprotein B (apoB) mRNA transcripts around the editing site and thus plays an important role in apoB mRNA editing. hnRNP A/B contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long C-terminal glycine-rich domain that contains a potential ATP/GTP binding loop.
Statistics
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PSSM-Id: 241201
Aligned: 5 rows
Threshold Bit Score: 143.975
Created: 20-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3S7R_B        13 KXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPnTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87  human
NP_001080489  65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPnTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKA 139 African clawed frog
NP_997752     70 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPnTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKA 144 zebrafish
NP_990659     91 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPnTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKA 165 chicken
NP_001168848  76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPnTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKA 150 maize
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