Conserved Protein Domain Family
RRM1_CoAA

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cd12608: RRM1_CoAA (this model, PSSM-Id:241052 is obsolete and has been replaced by 410020)
RNA recognition motif 1 in vertebrate RRM-containing coactivator activator/modulator (CoAA)
This subgroup corresponds to the RRM1 of CoAA, also termed RNA-binding protein 14 (RBM14), or paraspeckle protein 2 (PSP2), or synaptotagmin-interacting protein (SYT-interacting protein), a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. It stimulates transcription through its interactions with coactivators, such as TRBP and CREB-binding protein CBP/p300, via the TRBP-interacting domain and interaction with an RNA-containing complex, such as DNA-dependent protein kinase-poly(ADP-ribose) polymerase complexes, via the RRMs.
Statistics
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PSSM-Id: 241052
Aligned: 4 rows
Threshold Bit Score: 123.394
Created: 19-Sep-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96PK6         1 MKIFVGNVDgadTTPEELAALFAPY--GTVMSCAVMKQFAFVHMREnAGALRAIEALHGheLRPGRALVVEMS 71  human
AAH77356       8 MKIFVGNIDe-rTSEGEVTALFERY--GAVLNCAVMRQYAFVHMRGtREATKAVEELNGr-ELNGKKMLVELS 76  African clawed frog
AAI54223       7 VKLFVGNLAl-dTTQEELSAIFESY--GQVVSCSVLRQFAFVHLQGeGAAERAIRELNGr-EFKGRNLVVEES 75  zebrafish
XP_003229966   5 VKVFVGNVPe-eTSQVELRDLFQAVepGAVLKVALMKQFAFVHLRDeAAADRAIAKLNGq-LVHGHRVVVEHS 75  green anole
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