Conserved Protein Domain Family
RRM1_RBM15B

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cd12554: RRM1_RBM15B (this model, PSSM-Id:240998 is obsolete and has been replaced by 409970)
RNA recognition motif 1 in putative RNA binding motif protein 15B (RBM15B) from vertebrate
This subfamily corresponds to the RRM1 of RBM15B, also termed one twenty-two 3 (OTT3), a paralog of RNA binding motif protein 15 (RBM15), also known as One-twenty two protein 1 (OTT1). Like RBM15, RBM15B has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. RBM15B belongs to the Spen (split end) protein family, which shares a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain.
Statistics
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PSSM-Id: 240998
Aligned: 4 rows
Threshold Bit Score: 122.265
Created: 17-Oct-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8NDT2       137 EYKTLLISSLSPALPaEHLEDRLFHQFKRF-----GEISLRLSHTPELGRVAYVNFRHPQDAREARQHAlarQLLLYDRP 211 human
XP_002935665  76 EYKTLLISNLGSALPdPLLEDWLFRHFQRF-----GDISVKLSHTPELGRVAYINFRRPAEARQARHAKv--RPVLYDRQ 148 western clawed ...
XP_003217678 164 EYKTLLVSGLSPALPdQLLEEGLFRQFQRFasggaGDISVKLSHTPELGRVAYVNFRHPSDARDARRHArarQLLLFDRP 243 green anole
CAF89258      19 EYKTLLVSNLGSQVSdEDVEDALIHEFKKF-----GDVSVKLSHTPELGRIAYVNFRHPEDAKEARHAKs-sRLLLGERP 92  spotted green p...
Q8NDT2       212 LKVEPVY 218 human
XP_002935665 149 LRVEPVF 155 western clawed frog
XP_003217678 244 LKVEPVY 250 green anole
CAF89258      93 LKVEPMY 99  spotted green pufferfish
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