Conserved Protein Domain Family
RRM4_SHARP

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cd12351: RRM4_SHARP (this model, PSSM-Id:240797 is obsolete and has been replaced by 409787)
RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
This subfamily corresponds to the RRM of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, is an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins.
Statistics
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PSSM-Id: 240797
Aligned: 12 rows
Threshold Bit Score: 124.306
Created: 16-Sep-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96T58        510 FGKSMPTNCVWLDGLssNVSDQYLTRHFcRYGPVVKVVFDRlkGMALVLYNEIEYAQAAVKEtKGRKIGGNKIKVDF 586  human
Q8SX83        727 FGKSMPTNCVWIDGVdeKVSESFLQSQFtRFGAVTKVSIDRnrQLALVLYDQVQNAQAAVKDmRGTILRRKKLQVDF 803  fruit fly
CAX13657      512 FGKSMPTACVWLDGLtsNITEQYLTRHFcRYGPVVKVVFDRlkGMALVLYNNTDFAQAAVREtKGWKIGGNKIKVDF 588  zebrafish
XP_002411413  422 FGKSMPTMCVWLDGIvdTVSEKFLSRTFsRYGPVSFAAIDRekGHALVYFDSLECAQHAVAEmRGRVLGGKKLQVDF 498  black-legged tick
EFX78543      255 FGKSMPTNCVWLHGVaeSVAEKFLARHMsRFGHVSYAAIDRerFNGLVFYDQVSCAQAAVQElRGRALAGRKLQVDF 331  common water flea
XP_002125313  426 FGKTVMSSCVWVEGVtdSFTEHYLASCFqKHGPVEHVVIDRnrGQALVFYQKYEHAQQALNTmRGRKLNGSRLKLDY 502  Ciona intestinalis
XP_002613946  488 FGKSMPCNVVWLCGMleSMTEQQLGRHYsRHGTINNIVVDRqrSACLLFFEDTEAAQSAVGEaKARPFMGRRLKVDF 564  Florida lancelet
XP_003374357  513 FGKPVPTTMVWIDDLptHVTEVYLRRKLgFYGCVIDVIIDAqmHQAVVVFDDVDAAQKAVQGmKGSKIYEARIQVDF 589  Trichinella spir...
XP_002732434  471 FGKSMANNCLWIEGIaaTVTESTLGRFFsRYGAVTHCDIDRksELALAYFDKVESAQFALNEtKGRKLSKKRLQVDF 547  Saccoglossus kow...
XP_417618     539 FGKSMPTNCVWLDGLstNVTDQYLTRHFcRYGPVVKVVFDRlkGMALVLYNEIEYAQAAVKEtKGRKIGGNKIKVDF 615  chicken
CCD76179      346 FGKSQPTNVVWLDNLspTINEAFLTRQFgRYGQLTHVVLDRksMRALLYFDNVEVAQHAVNEtRNRALVGRKVQIDY 422  Schistosoma mansoni
XP_003382390  352 FGKGTPSKVLWIDGIdaSLNETQVKSHFsKYGTVVRIGIDRstYTAMVQFDKVDEAKDALSSvKGSFICNTHSKIMA 428  Amphimedon queen...
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