Conserved Protein Domain Family
RRM3_SHARP

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cd12350: RRM3_SHARP (this model, PSSM-Id:240796 is obsolete and has been replaced by 409786)
RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
This subfamily corresponds to the RRM3 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins.
Statistics
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PSSM-Id: 240796
Aligned: 10 rows
Threshold Bit Score: 127.903
Created: 26-Sep-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96T58        436 ATRTLFIGNLEKt-tTYHDLRNIFqrFGEIVDIDIKKvng-------------vpQYAFLQYCDIaSVCKAIKKMDGEyL 501  human
Q8SX83        654 STRTLFIGNLEKd-iTAGELRSHFeaFGEIIEIDIKKqg--------------lnAYAFCQYSDIvSVVKAMRKMDGEhL 718  fruit fly
CAX13657      438 ATRTLFIGNLEKt-tNYQQLLDVFqrFGEIVDIDIKRvng-------------vpQYAFVQYSDIaSVCKAIKKMDGEyL 503  zebrafish
XP_002411413  348 ATRTLFIGNLEKd-iTTSELRKHFdqFGEIIEIDIKKqgs-------------asSYAFIQYSDIaSVVKAMRKLDGEnL 413  black-legged ...
XP_002613946  413 ATRTLFIGNLEKs-tSYSDIRSAFekFGDIVDIDIKKqps------------gnsTYAFLQYMDItSVVKAMRKMDGEfL 479  Florida lancelet
EFX78543      168 ATRTLFIGNLEKd-vTAAELRASFetFGPIIEIDIKKqsqgsssaannnnnnnnnAYAFCQYADIaSVVRAMRHLDGEqV 246  common water ...
XP_001632954  155 CTRTLFVGNIEKt-tTYGDLKEAFerYGEVIDVDIKKqpg-------------nnPYAFVQFAELsSAIQARRKMDREyV 220  starlet sea a...
XP_002732434  397 ASRTLFIGNLEKn-tTYSDLREKFkaFGEIVDIDIKKqgg-------------vpAYAFMQFANIkSVVKSLKKMDGEpI 462  Saccoglossus ...
XP_417618     465 ATRTLFIGNLEKt-tTYHDLRNIFqrFGGIVDIDIKKvng-------------vpQYAFLQYCDIaSVCKAIKKMDGEyL 530  chicken
CCD76179      269 ATKTLFVGNLCSgtiTQDELRRTFrgYGEIIEIDIKIqanq-----------pgtSYAFIQYGDIkSVVRALKEQETVrV 337  Schistosoma m...
Q96T58        502 GNNRLKLG 509  human
Q8SX83        719 GSNRIKLG 726  fruit fly
CAX13657      504 GTNRLKLG 511  zebrafish
XP_002411413  414 GANRIKLG 421  black-legged tick
XP_002613946  480 GKSRLKLG 487  Florida lancelet
EFX78543      247 GNTRVKLG 254  common water flea
XP_001632954  221 GRNRVKVG 228  starlet sea anemone
XP_002732434  463 GKNRFKLG 470  Saccoglossus kowalevskii
XP_417618     531 GNNRLKLG 538  chicken
CCD76179      338 NGKPVKLG 345  Schistosoma mansoni
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