Conserved Protein Domain Family
RRM1_SHARP

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cd12348: RRM1_SHARP (this model, PSSM-Id:240794 is obsolete and has been replaced by 409784)
RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
This subfamily corresponds to the RRM1 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins.
Statistics
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PSSM-Id: 240794
Aligned: 9 rows
Threshold Bit Score: 88.6598
Created: 26-Sep-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96T58          7 HLWVGNLPenvREEKIIEHFKr---------------------------------------------------------- 28   human
CAX13657        7 HLWVGNLPehvREEKIVEHFKr---------------------------------------------------------- 28   zebrafish
CAJ83546        7 HLWVGNLPenvRDEKIIEHFKr---------------------------------------------------------- 28   western clawe...
XP_002154856    7 HLWVGNLPetvREEQIQDYFSr---------------------------------------------------------- 28   green hydra
XP_002125313    6 HLWIGNLPpnsREDRIYDYFKr---------------------------------------------------------- 27   Ciona intesti...
ADY39804       77 HVHVLGLPdalSEERVSNFFSt---------------------------------------------------------- 98   pig roundworm
EEY70127      117 NLFVANIPphiKMSELDQAFAq---------------------------------------------------------- 138  Phytophthora ...
XP_417618      26 SWSTGEAPgnwKLASVTPIYKkghked----------------------------------------------------- 52   chicken
EFA08686        7 HLWVGNLPdniREDRIREHFKrrlvrnvtnittprrqtmplfgrqsiqpqkllssvklprcrlygrrrldrpissfrknn 86   red flour beetle
Q96T58         29 -------------------------------------------------YGRVESVKILpkrg----seggVAAFVDFVD 55   human
CAX13657       29 -------------------------------------------------FGRVESVKVLrkrg----seggVAAFVDFVD 55   zebrafish
CAJ83546       29 -------------------------------------------------YGRVESVKILpkrg----sdggVAAFVDFVD 55   western clawe...
XP_002154856   29 -------------------------------------------------YGRVEKVKLLakts----pdggRAAFVDFVD 55   green hydra
XP_002125313   28 -------------------------------------------------YGRIDKVKFLskrg----sdgnPCAIVAFVD 54   Ciona intesti...
ADY39804       99 -------------------------------------------------FGRVQKAERLs----------sSGVVVSFMD 119  pig roundworm
EEY70127      139 -------------------------------------------------FGEVKNVKVLpqar----pdapMSAFVDYTD 165  Phytophthora ...
XP_417618      53 --------------------------------------------frnyrYGRVESVKILpkrg----seggVAAFVDFVD 84   chicken
EFA08686       87 stiisifisrgmfhaaldsiivkqygfvsetmfshrviamsqqpyywttYGRVQSVKLLsrgakeeagegaMACTVAFMD 166  red flour beetle
Q96T58         56 IKSAQKAHNSvnKMGDRDLRTDYNEP 81   human
CAX13657       56 IKSAQKAHNAvnKMGDRDLRTDYNEP 81   zebrafish
CAJ83546       56 IKSAQKAHNAvnKMGDRDLRTDYNEP 81   western clawed frog
XP_002154856   56 IRSATKANEAqnRMGERDLRTNYNEP 81   green hydra
XP_002125313   55 IRSAQKAHNSvnRFDECVLQTNYSES 80   Ciona intestinalis
ADY39804      120 VRSAQKAHSAepKFDGHQLRITFHDQ 145  pig roundworm
EEY70127      166 ISSAQKAHSAtiIVAGQHLRTDYNFR 191  Phytophthora infestans T30-4
XP_417618      85 IKSAQKAHNSvnKMGDRDLRTDYNEP 110  chicken
EFA08686      167 IKSASKAHNAehKIDDRTLTTEYYEP 192  red flour beetle
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