Conserved Protein Domain Family
RRM_NOL8

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cd12226: RRM_NOL8 (this model, PSSM-Id:240672 is obsolete and has been replaced by 409673)
RNA recognition motif in nucleolar protein 8 (NOL8) and similar proteins
This model corresponds to the RRM of NOL8 (also termed Nop132) encoded by a novel NOL8 gene that is up-regulated in the majority of diffuse-type, but not intestinal-type, gastric cancers. Thus, NOL8 may be a good molecular target for treatment of diffuse-type gastric cancer. Also, NOL8 is a phosphorylated protein that contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), suggesting NOL8 is likely to function as a novel RNA-binding protein. It may be involved in regulation of gene expression at the post-transcriptional level or in ribosome biogenesis in cancer cells.
Statistics
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PSSM-Id: 240672
Aligned: 25 rows
Threshold Bit Score: 84.1463
Created: 18-Nov-2011
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q76FK4          9 RLYVGGLsqd--isEADLQNQFSRFGev--sDVEIITRkddqgnpqKVFAYINISva-eaDLKKCMSVLNkTKWKGGTLQ 83   human
Q9HFE6          6 RIYVGGLsss--ieSSDLESRFSRFGsv--sNLEIINKstpv-gtiQRFAYLNFRtd-edKWQKCKSYLSnATFKGSKLR 79   fission yeast
EGF76554       54 RLFIGGLpld--vsSEDLTARFSSFGtv--sQVDIRSKpdq---hqSYFAFLSLRtt-vgSLKKCISIYHgTKWKGHALR 125  Batrachochytr...
XP_002175698    9 RVFIGGLset--irEEDLVPRLQRFGqt--sNFEIVEKkqpv-gtvHRFAYVDLEst-daNWVKCRTQLTnVVFRGSRLK 82   Schizosacchar...
EGG03061       11 RLHIGGIaps--vsAEEIERRFSSFGkv--iAVDGIGKldan-gsvLRYGFLELEtt-qqQLNRCMNLLSgTTYKGHTMR 84   Melampsora la...
EFN59108        3 RLFVGGLppg--vtPDDLRQRFLPFGevtecSIAPAKSygpgvvfpRNFGHVELQpkdeaALRKCIAAYNgCKWRGSQLK 80   Chlorella var...
EFW96988        7 RIYVGSMskslaenPRDLEQRFEKFGkv-vrGFEIHHKev----ldYYYGYITLQip-edQLKKLKRSFNgVTYKGSKLA 80   Pichia angust...
Q08287          8 RIFVGNIfhnaddcYSELLDRFGKFGdc--qDFQFEKH--------NHFAFIDIRfndeaDFNKLRKSFNnVKFKGNILK 77   Saccharomyces...
CCE78764       10 RIHIGNIsskiaadTSLLTRRISKFGtl-ldDIELHTKpl----gdHYFGYLTLRts-ekDLGKLKAALSgSVFMGGRLT 83   Millerozyma f...
XP_002493278    7 RIYIGNIsadlasdIGNLETRLKRYGtl-ekPLELHKKpl----ldSYFAYISLKls-dqNFAKLKGSLNgLNYKGSRVV 80   Pichia pastor...
Q76FK4         84 IQLAK 88   human
Q9HFE6         80 IEEAR 84   fission yeast
EGF76554      126 IEESK 130  Batrachochytrium dendrobatidis JAM81
XP_002175698   83 LEEAK 87   Schizosaccharomyces japonicus yFS275
EGG03061       85 IALAK 89   Melampsora larici-populina 98AG31
EFN59108       81 CAPAH 85   Chlorella variabilis
EFW96988       81 IQEAK 85   Pichia angusta DL-1
Q08287         78 VDEAK 82   Saccharomyces cerevisiae S288c
CCE78764       84 ISQAK 88   Millerozyma farinosa CBS 7064
XP_002493278   81 VDMAR 85   Pichia pastoris GS115
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