Conserved Protein Domain Family
LKR_SDH_like

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cd12189: LKR_SDH_like 
bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
Bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase protein is a pair of enzymes linked on a single polypeptide chain that catalyze the initial, consecutive steps of lysine degradation. These proteins are related to the 2-domain saccharopine dehydrogenases. Along with formate dehydrogenase and similar enzymes, SDH consists paired domains resembling Rossmann folds in which the NAD-binding domain is inserted within the linear sequence of the catalytic domain. In this bifunctional enzyme, the LKR domain is N-terminal of the SDH domain. These proteins have a close match to the active site motif of SDHs, and an NAD-binding site motif that is a partial match to that found in SDH and other FDH-related proteins.
Statistics
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PSSM-Id: 240665
Aligned: 41 rows
Threshold Bit Score: 518.653
Created: 11-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative NAD(P) binding site [chemical binding site]
Evidence:
  • Comment:GxGxx[GSDA] motif resembles GxGxxG(17-18x)D, the characteristic NAD binding site motif of FHD-like proteins
  • Comment:based on comparison to L-Alanine Dehydrogenase and related proteins with structures containing bound NAD(P) or derivatives (contacts defined at 4A)
  • Citation:PMID 9761911

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
NP_567914   16 VVGILAETVn-kWERRTPLTPSHCARLLHggkdrtgISRIVVQPSAKRIHHDALYEDVGCEIs---dDLSDCGLILGIKQ 91   thale cress
EGG03085    28 QLLIKAEATsrlWERRTPLVPDDITHLFDslg--sqSINIKLESSQKRIFDDQSYEKVGAQIvppgtADGDADLILAIKE 105  Melampsora laric...
CCA68266    34 ILGIRREDPsriWERRAPLTPQAVKSLITe-----dGIDVVVQPCARRIFPMEEYIQAGARPs---eGLDAANILVGIKE 105  Piriformospora i...
EIM82894    30 TIGIRCEDParvWERRAPLTPDVVADLVEk-----dGVRVLVQECERRVFPLDEYIRAGAEAh---pTLDPAHIILGIKE 101  Stereum hirsutum...
EFI26592    14 VVCIRREDPkriWERRAPLTPDDVAALLAkh----pNLSIEIQPCNKRVFPIEDYLHAGATL-----ASRAPDIFLGIKE 84   Coprinopsis cine...
EIN04157    25 TVGLRREDPsrvWERRCPLTPAAVRELVHe-----hGARVLVQPCERRVFDAQEFVEAGAEIh---pTLAPAHVVLGIKE 96   Punctularia stri...
EFI95940    13 VLGIRREDPariWERRSPLVPAHVRQLLEkh----kDLKVQVQRCTRRFFTEEQYTEAGAQVv---dDLSQAHIILGVKE 85   Schizophyllum co...
EDQ99673    12 YPFHSREDPeriWERRVPLTPDAVYHLVSk-----hNVDVQVMPCHRRVFPNQEYEKAGARVe---sNPTLSNIVLGIKE 83   Laccaria bicolor...
EHO40807    34 SILIRAEDKn-iYERRTPIVPQDLAKILKk-----tPTDAFVEKSDKRFFKEQEYEAVGAKIc---qGMEPGDIILGVKE 104  Caldithrix abyss...
EAL23574    19 TLGLRREDPsriWERRTPLTPHAVQSLLAda---kdQLKVEVESCKRRCFPDSLYSDAGAKIvp--sLSKDVDVILGIKE 93   Cryptococcus neo...
Feature 1                                                                                      
NP_567914   92 PEL------------------EMILPERAYAFFSHTHKAQKENMPLLDKILSE-----------------------RVTL 130  thale cress
EGG03085   106 ISIndln----------ptssTKPNHKRTYCFFSHTHKGQSYNVPLLQKMVSS-----------------------GDRF 152  Melampsora laric...
CCA68266   106 TPLdel------------ltnEIDGKPRTHIMFSHTAKGQHYNMPLLAKFTQS-----------------------SARL 150  Piriformospora i...
EIM82894   102 PPLttllttpvlssspvsssaAPVLNPRTHVMFSHTIKGQEYNMPLLSRFLTGgykyadkgagtmpgisskeeeglEPRL 181  Stereum hirsutum...
EFI26592    85 TPVp-----------------ELTWGPQTHLMFSHTHKGQPYNAPLLARFLEQyskpk-------------hastpAPRL 134  Coprinopsis cine...
EIN04157    97 PPLhelrtdpv--pspspsssPSQLVPRTQLMFSHTTKGQPYNMPLLSRFLAGhpgtpd------------hdprlLARL 162  Punctularia stri...
EFI95940    86 PPLeevftd------gvaspkDDSTASRVSLMFSHTTKGQAYNMPLLRKFLRGqned---------------khvkPATL 144  Schizophyllum co...
EDQ99673    84 TRLselkdqla--nlsrnpldTTAYNDQTHLMFSHTAKGQPYNTPLLSQFVAPldete-------------ttkllRPRL 148  Laccaria bicolor...
EHO40807   105 IPV------------------NKLLSDKVYLFFSHTIKGQKDNMPMLQKIIDS-----------------------KSTL 143  Caldithrix abyss...
EAL23574    94 PRLsdirn--------lveasKNEGKKRTWMMFSHTHKGQEYNIPLLSAFLHP-----------------------TQTL 142  Cryptococcus neo...
Feature 1                                                                                      
NP_567914  131 CDYELIVGDh--------GKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYsslaaaKAAVISVGEEI 202  thale cress
EGG03085   153 IDWELLTNPh-------sGSRTVSFGRLAGLVGAAEALSGLGLACLRHGVSTPFLNLARPYTFnsevelMNAIGRLRDRI 225  Melampsora laric...
CCA68266   151 IDYELLTDSq--------GKRVVAFGWYAGAAGVPEALNALGLDYLSMGVSSPFLLLPRPYHHssleelRNSMRRIGSII 222  Piriformospora i...
EIM82894   182 IDYELLVDGs--------GKRTVAFGWFAGVAGALESLSAMADMHLKGGVASPFLYTPRPHSSpslehlRSALQWIATQI 253  Stereum hirsutum...
EFI26592   135 IDYELLTDPs-------tGKRTVGFGWFAGVAGVLESLSAMAHHHLEHGVASPFLYTPRPHTVpsldeaRKQLRNIGGLI 207  Coprinopsis cine...
EIN04157   163 VDYELLTDAe--------GKRTVGFGWFAGVAGALESLSALAQAHLHLGVASPFLYTPRPHTQpdipalRASLRAIGARI 234  Punctularia stri...
EFI95940   145 IDYELLVNEe--------GKRTVGFGHFAGVAGAFEAFHSLGLSLLEKGYATPFLYSPRPQSQptletlKTAFHHTSTMI 216  Schizophyllum co...
EDQ99673   149 IDYELLTNGt-------dGKRTVGFGWFAGVAGVLESLSSMAHSHLEIGVASPFLYTPRPHTLpslerlRAALREIGDTI 221  Laccaria bicolor...
EHO40807   144 IDYERITDAq--------GRRLVFFGRFAGDAGAINILWLMGQNWQARELHTPFAECKQALHYhsvkeaHEHVKQIGEKI 215  Caldithrix abyss...
EAL23574   143 IDHELLTAPapgkdgkpqLKRVAAFGWFAGAVGAGEALSLTGLALLRRGLATPLLSLSRPYSLgslaafKEALKKAGEEV 222  Cryptococcus neo...
Feature 1                       #  ##                       ###                                
NP_567914  203 ASqglPLGICPLVFVFTGT-GNVSLGAQEIFk----LLPHTFVEPSKLPElfvkdkgisqngistkrvyqVYGCIITSQD 277  thale cress
EGG03085   226 HRe-gYNGDHPISVVITGStGRVGKGAVEVLdqvgiQWATDLNEFRQMAKdeegh----------hrqhkIIGYKLGLED 294  Melampsora laric...
CCA68266   223 SErgmPEATGPCIIALTGN-GNVSQGALSLLq----ELPIKQIEARDLAKvatspn---------tprnfVYLIHVKPED 288  Piriformospora i...
EIM82894   254 TEhgtPRSLGPCVIGVTGN-GKVSQGALSILs----ELPLVYIKPEDLPAlvnnsn---------adltkIYIVHALPES 319  Stereum hirsutum...
EFI26592   208 REygvPEALGPFIIGLTGR-GNVSQGCLSMLe----ELPLEHIRVKDLDAlvkdpn---------asrhkVYLVHVQPEE 273  Coprinopsis cine...
EIN04157   235 AArgtPPSMGPFVVCVTGN-GQVAQGCLSILs----ELPIERVPASRLPAl-------------------IYLVHAQPAD 290  Punctularia stri...
EFI95940   217 AEngiPQQLGPIIVGLTGS-GLVSKGALSVLk----DLPHDMVTVEQLPLllqgfd--------avnhkkVYIYHAHPQD 283  Schizophyllum co...
EDQ99673   222 SKsgtPPKLGPFVIGLTGR-GNVAEGCLFMLs----ELPIQMVNVADLDDl-------------------IYLIHAKPED 277  Laccaria bicolor...
EHO40807   216 KQqglPQEINPLIIGVLGY-GNVSKGAQYIFd----ALPVERINPEQLTEffkkgn---------fdahkVYLTIFKEEH 281  Caldithrix abyss...
EAL23574   223 KTsadLKGQEPIVIGVTGA-GNVSSGATEMLn----ELGVVWVGPEDLADlrqsg-----------spnkIYACAITPAS 286  Cryptococcus neo...
Feature 1                                                                             ###      
NP_567914  278 MVEHKDPSk-------------SFDKADYY--------AHPEHYNPVFhek----------isPYTSVLVNCMYWekRFP 326  thale cress
EGG03085   295 HLIRLDDSn------------sPFDRQLYNss----peLFRSTFSKTIdtdscgfvcgidkvaPWTNLLINGSYWssEFP 358  Melampsora laric...
CCA68266   289 YLVDIRGD--------------PYNRSTYY--------SRPELYVSLFyqr----------iaPYISLLINGTGWkpGFP 336  Piriformospora i...
EIM82894   320 YLSRQDGK--------------PYDRADYY--------ENSQAYESHFhtk----------iaPYLTLFLNGAGWnpACP 367  Stereum hirsutum...
EFI26592   274 YLIDVNGG--------------SYNRDSYY--------ANPESYKSVFher----------vaPYLTLLLNGTGWspSYP 321  Coprinopsis cine...
EIN04157   291 YLSSSVSSsvsvsssvpssgsgSYSRAAYY--------ADPSAFRSDFhar----------iaPYATLLLNGVGWapGSP 352  Punctularia stri...
EFI95940   284 YLTRQDGG--------------PYDRSSYYesprlyssKFAEKASSLPsnslwy---elifvaPYLTMLINGVGWqpGFP 346  Schizophyllum co...
EDQ99673   278 YFIGVDGS--------------PYDRARYY--------ASPQSYISVFaek----------vaPYLTLFLNGTGWspSFP 325  Laccaria bicolor...
EHO40807   282 LVEHKQGK--------------RFELQDYY--------QNPGNYRPVFdr-----------ylPYLSILVNAIYWepRYP 328  Caldithrix abyss...
EAL23574   287 YLQRIEGG--------------IFDKQEYY--------KSPDKYMSIFaak----------iaPHLTTLINGVGWskGFP 334  Cryptococcus neo...
Feature 1                                                                                      
NP_567914  327 CLLSTKQLQdltk------kglPLVGICDITCDIGGSIEFVNRaTLIDSPFFRFNpsnnsyy-------------ddmdg 387  thale cress
EGG03085   359 RLLNSTDLIsllqd----qtinRMWSVADISCDFKGGLEFVERaTSIEDPYAYLGvsqdhqrie--------evpwrhpa 426  Melampsora laric...
CCA68266   337 RLLNNQQLAaaqrha-krggklRFRSIADISCDIEGGLEFVSRaATISEPFFSARpsnhp-----------------ddl 398  Piriformospora i...
EIM82894   368 RLLLTSHLQah---------tpRLAAIGDISCDIEGALEFVKKsTTIDKPCYTVGegag------------------wkg 420  Stereum hirsutum...
EFI26592   322 RILPTDTLPsvlsha-ysigglRATNIGDISCDIEGGIEFMERaTTISDPCFKVRvptakfagdrsstgspstttavshk 400  Coprinopsis cine...
EIN04157   353 RLMSTAQLVdalrragalgqpgRLGVVGDISCDIEGGLEFLTRpSTLSAPFYTLAhpavp-----------------agl 415  Punctularia stri...
EFI95940   347 RLMTKEDLDkalsla-rvypgfRLQNIADISCDIGGGLEFMTQsTTLSHPTYIEHpadp-------------------tl 406  Schizophyllum co...
EDQ99673   326 RLMTNEQLTvalera-rqlggaRFTNIGDISCDVEGGLEFMTKaTTLSAPFFKTRptclp-----------------aey 387  Laccaria bicolor...
EHO40807   329 RFVTWESLAalks-----agklRLQGIADITCDVNGSIECNVKaTDSGSPAYLVHpetrtvt-------------dghig 390  Caldithrix abyss...
EAL23574   335 RAITRPSLNkliek---engkqKLVAVQDITCDKEGGLEFVDQfTTVDNPYFEGPg------------------------ 387  Cryptococcus neo...
Feature 1                                                                                     
NP_567914  388 dGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLAsmtei----------sdlpaHLKRACISYRGELTSLYEYIPRMR 456  thale cress
EGG03085   427 sTLQLISIEILPTELAKDASIAFSKAVVPYIKAFVetne------------dlnhQLDSATICSDGKLKPAHESLQALI 493  Melampsora larici...
CCA68266   399 sGIQVMSVDILPSELPLDSSRHFSNKFLPYLQSLIkaekgrple---qkdlsnldVLRRGTIVQDGKLLEPHNWLTERM 474  Piriformospora in...
EIM82894   421 mGISVMAVDILPASLPKDASESFAGAVKDYVRCLVaeqkagsgsdlgngdnelrkALKRATVAVGGRVTGGEGSSFDDG 499  Stereum hirsutum ...
EFI26592   401 gEIQIMSVDILPASIPLDASKHFSSVLRPYIEAIVe------------------dHSSTNPIFSLDSPVLGSAYSRALD 461  Coprinopsis ciner...
EIN04157   416 pPVTMMAVDILPAALPLDASAHFSGVLMPYLRAVVrgyrgeggl--geeeaereeALERATVARGGGLEERHRWLGEGV 492  Punctularia strig...
EFI95940   407 pPVTIMSVDILPASLPFDASMHFSTVLYPYLEDIIvryang--------earfsdAIERAVVAKDGRLTEPHAWLEEAA 477  Schizophyllum com...
EDQ99673   388 pPVQIMSVDILPASIPLDASQHFSRSLLPYLESLIgtfdgsk-------ndeftaALEKATIAKEGKLADKHLWLQSAV 459  Laccaria bicolor ...
EHO40807   391 dGIVLLAVDNLPAELPNDSSRFFSEQLWPFIPGIVtadfdqpl-----eksglpdEIKRAVIVYKGELTEAYRYLIEPL 464  Caldithrix abyssi...
EAL23574   388 -DILISAIDILPTELAADASSYFSSALYPYIQGLLfpsgqgd-------knditeTLSRAAIVKDGVLQSQHEWLGGKI 458  Cryptococcus neof...

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