Conserved Protein Domain Family
SOCS_Rab40

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cd03742: SOCS_Rab40 
SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Statistics
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PSSM-Id: 239711
Aligned: 8 rows
Threshold Bit Score: 81.8386
Created: 2-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative elongin B/C interaction [polypeptide binding site]
Evidence:
  • Comment:based on the homology to the human SOC2 complex

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      ######     #      #     #    #            
AAV83924  168 NRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMAN 210 human
XP_708431 168 NRVFSLQDLCCRAIVSCTPVHLIDKLPLPVAIKSHLKSFSMAN 210 zebrafish
AAH84101  187 NKVFSLQDLCCRAIVSCTPVHLIDKLPLPVAIKSHLKSFSMAN 229 African clawed frog
XP_415603 187 NKVLTLQDLCCRAIVSCTPVHLVDKLPLPVALRSHLKSFSMAN 229 chicken
NP_572800 182 NKVLSLQELCCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTT 224 fruit fly
XP_785620 146 NKVLSLQDFCCRTIVNCTSTYSIDKLPIPMSLRSRLKSFADAN 188 purple urchin
XP_397266 191 NKVLSLQELACRAIVARTTVYGIDQLPLPKSIKSHLKSYAMTT 233 honey bee
XP_969860 258 NKVLSLQELCCRAIVARTTVYSIEQLPLPTCVKSYLKSYALTT 300 red flour beetle

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