Conserved Protein Domain Family
SOCS_WSB_SWIP

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cd03733: SOCS_WSB_SWIP 
SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Statistics
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PSSM-Id: 239702
Aligned: 11 rows
Threshold Bit Score: 75.9227
Created: 2-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative elongin B/C interaction [polypeptide binding site]
Evidence:
  • Comment:based on the homology to the human SOC2 complex

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ######     #      #     #    #        
AAH54567     383 RSIASLQHLCRMTLRRVMPTQQVYTLPIPFSMQDYLAYK 421 zebrafish
NP_001027919 387 RSIASLQHLCRMALRRVKTTQQVEALPVPMPLRDFLTYR 425 torafugu
CAG08162     380 LTVPSLRHLCRSILRHSVSTHQIEPLPLPKRIVEYLTYR 418 Tetraodon nigroviridis
XP_872331    382 RQVPSLQHLCRMSIRRVMPTQEVQELPVPSKVLEFLSYR 420 cattle
BAE29788     274 RVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYR 312 house mouse
AAH82668     368 KVLPSLRHLCRKALRCFLTTYQVLALPIPGKMKDFLTYR 406 African clawed frog
XP_415313    180 RVLSSLKHLCRKALRTFLTTYQVLALPIPRKLKEFLTYR 218 chicken
AAF80478     364 RVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYR 402 human
AAH64858     382 KYVSSLQHLCRMAIRRVMNTNEVKKLPIPQKIMEFLTYQ 420 western clawed frog
NP_990203    382 RQVSSLQHLCRMAIRRVMPTSQVKNLPTPSKVVEFLCYQ 420 chicken
BAD96296     382 RQVPSLQHLCRMSIRRVMPTQEVQELPIPSKLLEFLSYR 420 human

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