Conserved Protein Domain Family
Link_domain_CSPGs_modules_2_4

?
cd03520: Link_domain_CSPGs_modules_2_4 
Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Statistics
?
PSSM-Id: 239597
Aligned: 18 rows
Threshold Bit Score: 162.867
Created: 8-Mar-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative hyaluronan binding site [chemical binding site]
Evidence:
  • Comment:For CSPGs link module 2 (G1 domain) and aggrecan link module 4 (G2 domain), these two putative HA- binding sites are not well conserved.
  • Comment:HA-binding residues were identified in TSG-6 and CD44 by site-directed mutagenesis.
  • Comment:These two HA-binding residues are found at equivalent sequence positions in TSG-6 and CD44 . None of the other HA-binding residues identified were found at equivalent sequence positions in the two proteins.
  • Citation:PMID 9417085

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             ##                                                                       
P16112     254 EVFYAtsPEKFTFQEAANECRRLgARLATTGHVYLAWQAGMDMCSAGWLADRSVRYPISKARPNCGGNLLGVRTVYVHAN 333  human
NP_990071  261 KVFYAtaPGRFTLSGARRHCRGRgAALATTGQLYLAWREGLDQCDPGWLADGSVRYPILAPRRKCGGEAPGVRTLYRFPN 340  chicken
NP_004377  261 EVFYVgpARRLTLAGARAQCRRQgAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRTVYRFAN 340  human
NP_990118  250 EVVHVsvPEKLTFEEAKELCRKRdGVLASVGNMYVAWRNGFDQCDYGWLADGSVRYPASVARPQCGGGLLGVRTLYRYEN 329  chicken
CAG05373   231 EVFYPplSTKLTLQQAKDECHKHdSVIASTGQLFAAWREGLNGCDYSWLSDGSVRYPVTIPRPQCGGGLLGVRTLYKYEN 310  Tetraodon nigrov...
CAG10796   221 VVFLDpvPQKLSFDDAQAYCRSVgAELASTAQLYLAWREGLDHCSPGWLSDGSVRYPITSPRDRCGGPRAGVRTLYRFRN 300  Tetraodon nigrov...
Q62059     251 DVFHItaPSKFTFEEAEAECTSRdARLATVGELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFEN 330  house mouse
CAG04559   229 EVFHGsaPQGLTFREATAFCRSHgAEVATAAQLYAAWSDGLHRCSPGWLADGSLRYPAVTPGGRCGGAGPGVRSVYRHSN 308  Tetraodon nigrov...
AAI21482   264 DVYYV--PEKSTLLEASNSCLRDgGMLATVGQLYSAWRKGMDQCDPGWLADNSVRYPIRNPRRNCGGEEPGVRTLYQYPN 341  western clawed frog
CAG07891   221 KVYYSpaKNKMSFEEARKECQKEnAVLANPGQLHAAWRLGLDRCDYGWLSDGSARHPVAVPRIQCGGGLLGVRTMYRYKN 300  Tetraodon nigrov...
Feature 1                      
P16112     334 QTGypdpsSRYDAICY 349  human
NP_990071  341 RTGfplpaSKFDAYCY 356  chicken
NP_004377  341 RTGfpspaERFDAYCF 356  human
NP_990118  330 QTGfpypdSKFDAYCY 345  chicken
CAG05373   311 QTGfpdpaEKFGVYCF 326  Tetraodon nigroviridis
CAG10796   301 QTGfpdphSLHDVYCF 316  Tetraodon nigroviridis
Q62059     331 QTCfplpdSRFDAYCF 346  house mouse
CAG04559   309 QTGfpeahTRHDVYCF 324  Tetraodon nigroviridis
AAI21482   342 RTGfpnptRKFGAYCF 357  western clawed frog
CAG07891   301 QTGfpepaTMLGAYCF 316  Tetraodon nigroviridis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap