Conserved Protein Domain Family
Link_domain_HAPLN_module_1

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cd03518: Link_domain_HAPLN_module_1 
Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Statistics
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PSSM-Id: 239595
Aligned: 8 rows
Threshold Bit Score: 178.39
Created: 6-Mar-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative hyaluronan binding site [chemical binding site]
Evidence:
  • Comment:HA-binding residues were identified in TSG-6 and CD44 by site-directed mutagenesis.
  • Comment:These two HA-binding residues are found at equivalent sequence positions in TSG-6 and CD44 . None of the other HA-binding residues identified were found at equivalent sequence positions in the two proteins.
  • Citation:PMID 9417085

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ##                                                                    
Q9GZV7    148 VVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRGr-PGIRSY 226 human
AAH46259  166 VVFPYQPHGGRYQLNFHDAKKACEDQDAMMASFEQLFKAWEEGLDWCNAGWLMDGTVQYPITLPREPCGGKEtaPGVRSY 245 African clawed frog
NP_001875 159 VVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNtvPGVRNY 238 human
NP_990813 160 VVFPYSPRLGRYNLNFHEAQQACLDQDSIIASFDQLYEAWRSGLDWCNAGWLSDGSVQYPITKPREPCGGKNtvPGVRNY 239 chicken
CAG04560  198 VVFPYQSKNGRYKLSYEEARRACVEQDGTLASQEQLYRAWTEGLDWCNAGWLSDGTVQYPIIQPRPSCGGETs-SGLRSY 276 Tetraodon nigrovir...
CAG01054  126 VVFPYHSRKGRYRLSFFGARQACEDQDAGLATPEQLQAAWQDGLDWCNAGWLADGSVRYPITEPRAGCGGSA--PGLRTY 203 Tetraodon nigrovir...
CAF99863  122 VVFPYQHSRGRYRLSFLGAQQACEEQGATLATLAQLLQSWKEGLNWCNVGWLADGTVRYPITRPRVACGGPRlpPGIRSY 201 Tetraodon nigrovir...
BAD52342  141 VVFPYSPRLGRYNLNFQNAVAACQEQDAVVASFEQLYGEWKSGLDWCNAGWLSDGTVQYPITKPREPCGGARatAGLRNY 220 zebrafish
Feature 1                    
Q9GZV7    227 GPRDrmrDRYDAFCF 241 human
AAH46259  246 GERHkqlHRYDAFCF 260 African clawed frog
NP_001875 239 GFWDkdkSRYDVFCF 253 human
NP_990813 240 GFWDkerSRYDVFCF 254 chicken
CAG04560  277 GSRDq-eQNFDAFCF 290 Tetraodon nigroviridis
CAG01054  204 GEPHrllAHFDAFCF 218 Tetraodon nigroviridis
CAF99863  202 GRRHpnlHRYDVFCF 216 Tetraodon nigroviridis
BAD52342  221 GQRDnsnSRYDVFCF 235 zebrafish

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