1S64,1TNB,1N4R,1N4P


Conserved Protein Domain Family
GGTase-I

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cd02895: GGTase-I 
Click on image for an interactive view with Cn3D
Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity.
Statistics
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PSSM-Id: 239225
Aligned: 25 rows
Threshold Bit Score: 346.959
Created: 26-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:active site cavity [active site]
Evidence:
  • Structure:1N4R_B Rattus norvegicus, GGTase-I bound with a geranylgeranylated Kkksktkcvil peptide product, contacts at 4A
    View structure with Cn3D
  • Comment:The Zn2+-activated thiolate of Cys acts as a nucleophile to attack the ionized farnesyl group.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          #  ##  #   #                                               
1S64_L     22 RDRHVRFFQRCLQVLPer-ySSLETSRLTIAFFALSGLDMLdsld---------------vvnKDDIIEWIYslqvlpte 85  Norway rat
1N4R_B     22 RDRHVRFFQRCLQVLPer-ySSLETSRLTIAFFALSGLDMLdsld---------------vvnKDDIIEWIYslqvlpte 85  Norway rat
P18898     13 TKKHRKFFERHLQLLPss-hQGHDVNRMAIIFYSISGLSIFdvnvsaky-------gdhlgwmRKHYIKTVLddte---- 80  baker's yeast
P32434      5 RAKHIAFFKRHLILFPtp-yEEHDCERTVLAFFCLLGLDLLnalnt------------iddddKKSWIEWIYknyvtke- 70  fission yeast
AAD32539    6 INKHEKFFNRCLIGLPst-aQSEDSNKLAIIYFCLHGLQLIqkfqftn---------qeliyyRNFIINQFMien----- 70  Candida albicans
EAA53986   13 LAKHLRYFTRCMRTLLpqqyTSNDSTRMALGFFIISGIDLLtqdasstdpknsknassisatdRSNFRDWVLscq----- 87  Magnaporthe grisea...
AAS54874    5 VKKHVKFMERHIGLLPss-qEKNDANRLSIVYYSLAGICSLdada--------------lsghREKAAGSIVqlyrq--- 66  Ashbya gossypii AT...
CAG58830    9 KKKHVKYIERHLQLLPak-yEDNDVNKMAILYYSFQSLSLLgedi---------------qgkYSKYIPWIKshlitksa 72  Candida glabrata C...
CAG99437   10 VAKHIKFCQRHLQLLPsh-rLDIDPNRLAIAFYSLTAIELLgkpvr------------kdfqySLDWIRSCYiel----- 71  Kluyveromyces lact...
CAG79318    3 KTKHTKYFSRCLFLLPaq-aTSYDGNRLSIVYFCLSGLDLLgtldqf----------iktdeqRKEYIEWIYkqvv---- 67  Yarrowia lipolytic...
Feature 1                                              # ## ##                                
1S64_L     86 drsnldrCGFRGssylgipfnp------sknpgtahpYDSGHIAMTYTGLSCLIILGDDLsr------vdKEACLAGLRA 153 Norway rat
1N4R_B     86 drsnldrCGFRGssylgipfnp------sknpgtahpYDSGHIAMTYTGLSCLIILGDDLsr------vdKEACLAGLRA 153 Norway rat
P18898     81 ---ntviSGFVGslvm-----------------niphATTINLPNTLFALLSMIMLRDYEyfet---ildKRSLARFVSK 137 baker's yeast
P32434     71 -skgikySGFQAyrtgi---------------qpisfEQEPQLAGTVFSICCLLFLGDNLsr------idRDLIKNFVEL 128 fission yeast
AAD32539   71 ----nqiISFRSthyfq---------------ktnqkYDCPNLSSTLFALYNLLILKSPYhti-----inRKKIMNFLCK 126 Candida albicans
EAA53986   88 ----htaGGFAGstthtlppheydgwdfgslrtepgnSNCSNIAATAFALLLLALLADQAsgeavfygvdRVATLRWLKK 163 Magnaporthe grisea...
AAS54874   67 --fklsdGTVAGgflgsr-------------tmevsgHLTMSSANTLFATLSLLCLGKHEllrd---derRAAICELVSH 128 Ashbya gossypii AT...
CAG58830   73 pkqnqriSGFVGslnv-----------------rvdgVITFNLPNTLFALLVLALLKQHHyich---emdGESIGRFVGL 132 Candida glabrata C...
CAG99437   72 ----adySGFAIpsfr-----------------hakqLTTINLPNTLFGLICLMLLGDHEffde---klnRDTLGKFISS 127 Kluyveromyces lact...
CAG79318   68 ----esgEGFRGsptfklcghe-----hsesregdnkYDPANLAATFFGLACLGILGDREiwt----rlsRDKILSYVAS 134 Yarrowia lipolytic...
Feature 1                                                  #  ##                              
1S64_L    154 L----QLEDGSFCAVp----------------------eGSENDMRFVYCASCICYMLnnws------------------ 189 Norway rat
1N4R_B    154 L----QLEDGSFCAVp----------------------eGSENDMRFVYCASCICYMLnnws------------------ 189 Norway rat
P18898    138 Cq---RPDRGSFVSCldykt--------------ncgssVDSDDLRFCYIAVAILYICgcrsked--------------- 185 baker's yeast
P32434    129 C----KTSQGHFRSIav--------------------psCSDQDMRQLYMATTIASLLdfsl------------------ 166 fission yeast
AAD32539  127 CqvkdGINKGGFVPTlyynee------------ngdykqYGEPDLRVCYMALLIRHLMkyddhnnnnnnnnnnnnnnnnn 194 Candida albicans
EAA53986  164 L----QRPDGSFGEVlvdipnidshdankkgpgsvtetiAGGRDMRYCYLAAIIRWILrgdmqpedp------------- 226 Magnaporthe grisea...
AAS54874  129 C----QLPDGSFVSTldmcgg-------------gepsvVDSHDLRFCYIAVALLHLYgcrtpde--------------- 176 Ashbya gossypii AT...
CAG58830  133 C----QLPNGSFKSAldlsg--------------tsvspVDGEDLRFCYIAVALLYIIgcrspad--------------- 179 Candida glabrata C...
CAG99437  128 C----QLPDGSFTSFldnag---------------ypskFDSHDLRFCYIAVSILYLIgcrsesd--------------- 173 Kluyveromyces lact...
CAG79318  135 C----QRDDGSFGSFcid------------------gkvAPDYDMRYCYLATGIRRLArdtserls-------------- 178 Yarrowia lipolytic...
Feature 1                                            # #   #                                  
1S64_L    190 -------gmdmKKAISYIRRSMSYDNGLAqg---agLESHGGSTFCGIASLCLMgkleev-------------fsekeLN 246 Norway rat
1N4R_B    190 -------gmdmKKAISYIRRSMSYDNGLAqg---agLESHGGSTFCGIASLCLMgkleev-------------fsekeLN 246 Norway rat
P18898    186 ----fdeyidtEKLLGYIMSQQCYNGAFGa-----hNEPHSGYTSCALSTLALLsslek--------------lsdkfKE 242 baker's yeast
P32434    167 --------sdpLCSIQYIKSCQRYEGGFSll---pyGEAHAGATFCALASWSLIlkmipnsslntsnqsynlmdcvpkVE 235 fission yeast
AAD32539  195 redsnetdidlISLQQFILDRININGGFSst---imDESHLGFTFCAIASLKLLnyp------------------lekLK 253 Candida albicans
EAA53986  227 ---gwvedidvEALVRHIRAGQTFDGGVAes---smHESHAGYAYCAVSALSLLsrplegnvaet---qtgppqssvnIP 297 Magnaporthe grisea...
AAS54874  177 ----yaryvdvGRLVDYVLSQRCVGGAFGt-----fGEAHAGYTSCALSLLSILgklds--------------ldeefRD 233 Ashbya gossypii AT...
CAG58830  180 ----yskyinvSKLLDYIKNQQCFDGAYGq-----yGEAHAGYTSCALSTLALLkaret--------------idenfVE 236 Candida glabrata C...
CAG99437  174 ----fsryinvSKLLQYIMSRQCTMGGFGd-----wNEPHGGYTSCALSALSLLnqlqn--------------ipasfRQ 230 Kluyveromyces lact...
CAG79318  179 ----ssrdiniPAMVGHIKNTESFQGGIGqgqtgnvTEPHSGLTYCGLSALKNAgqln-----------------nkeWG 237 Yarrowia lipolytic...
Feature 1                                                             # ##  #                 
1S64_L    247 RIKRWCIMRQQng----------------------------------yhGRPNKPVDTCYSFWVGATLKLlkif------ 286 Norway rat
1N4R_B    247 RIKRWCIMRQQng----------------------------------yhGRPNKPVDTCYSFWVGATLKLlkif------ 286 Norway rat
P18898    243 DTITWLLHRQVsshgcmkfeseln-------------asydqsddggfqGRENKFADTCYAFWCLNSLHLltkdw----- 304 baker's yeast
P32434    236 RLIRWLASRQLssg--------------------------------glnGRTNKDVDTCYAYWVLSSLKLldal------ 277 fission yeast
AAD32539  254 STKEWLIHRQVdypenlypkdgndng--------dnyeyyrnidiggfnGRENKLSDTCYSWWCTGSLYNidvnf----- 320 Candida albicans
EAA53986  298 YILHFLASRQFeytdvlsdedddeenffqpdslsrlsltdeyppfvgfnGRVNKVADTCYCWWVCGTAEIlrqmhssegv 377 Magnaporthe grisea...
AAS54874  234 RTISWLVQRQVsaigavplpngn--------------ehfyaedhggfqGRENKAADTCYAFWCMNSLEIlgas------ 293 Ashbya gossypii AT...
CAG58830  237 KTLTWLSHRQVsssdimrkqeeqn-------------pfydtddhggfqGRPNKFADTCYATWCLNSIQLltkew----- 298 Candida glabrata C...
CAG99437  231 DTLHWLVNRQVsaigvfveqdln--------------ddydpddsggfnGRENKLADTCYAFWCLNSLRIlepqrw---- 292 Kluyveromyces lact...
CAG79318  238 TTLEWLVGRQCdertsetqvsesskrdd----ndsseeeqgdpqtggfnGRVGKLADTCYSFWVGASLASlggt------ 307 Yarrowia lipolytic...
Feature 1                               #        ##           
1S64_L    287 -qytnFEKNRNYILs-TQDRLVGGFAKWpdsHPDALHAYFGICGLSLM 332 Norway rat
1N4R_B    287 -qytnFEKNRNYILs-TQDRLVGGFAKWpdsHPDALHAYFGICGLSLM 332 Norway rat
P18898    305 kmlcqTELVTNYLLdrTQKTLTGGFSKNdeeDADLYHSCLGSAALALI 352 baker's yeast
P32434    278 -pfidGGELEKYLLl-HAQHALGGFSKTpgeFPDVLHSALGLYAMAYQ 323 fission yeast
AAD32539  321 iklvdLNKAEDYLLnkTQNQLFGGFGRDpdsTPDPMHSYLALASLSLW 368 Candida albicans
EAA53986  378 yvsmaQESARRFLMd-KTQHLIGGFSKHpggPPDVYHAYFGLSALAVL 424 Magnaporthe grisea 70-15
AAS54874  294 -alvdTSLIDSYLLqqTQNSLVGGFAKTdedDPDIYHTFLGIAALGLI 340 Ashbya gossypii ATCC 10895
CAG58830  299 qgyvdQRSLENYLLnvTQNQIIGGFSKNdadDPDLYHTCLGISALILL 346 Candida glabrata CBS138
CAG99437  293 sqlidVPLIRDYLLnqTQNKMVGGFAKNdqdDPDIYHSMMGISALKLI 340 Kluyveromyces lactis NRRL Y-1140
CAG79318  308 -nyvsADLAREYLLnnTQNTLLGGFGKTpgeIPDPLHSYLGVCALSIF 354 Yarrowia lipolytica CLIB99

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