1LTX


Conserved Protein Domain Family
GGTase-II

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cd02894: GGTase-II 
Click on image for an interactive view with Cn3D
Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane.
Statistics
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PSSM-Id: 239224
Aligned: 24 rows
Threshold Bit Score: 251.033
Created: 26-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:active site cavity [active site]
Evidence:
  • Comment:The Zn2+-activated thiolate of Cys acts as a nucleophile to attack the ionized farnesyl group.
  • Comment:active site cavity defined by similarity to Ftase and GGTase-I.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #  ##  #   #                                            
1LTX_B      18 LLLEKHADYIASygskk-ddyeyCMSEYLRMSGVYWGLTV----------------MDLMGQLhr------------mnK 68   Norway rat
CAD98718     9 LNSQKHYEFLLDlysnk-etvnsLLSYPIKMSGLFWGIGS----------------MKLLFNNlqsedrnq-ikkletrI 70   Cryptosporidium ...
XP_327795   14 LATSAHVKYIQSldsrk-deydyWLTEHLRLNGLYWGLTA----------------LHLLGHPea------------lpR 64   Neurospora crassa
AAX80948     8 LLADLHLRFLTKlddhk-dkmkyWTSQHLKMNGVFWCLGA----------------MKLLGHDdi------------lkR 58   Trypanosoma brucei
XP_648235    3 FIPQKHIEFLRNkekenendiesITSSHLKICGIYWGITT----------------LHLLNKVtd------------edK 54   Entamoeba histol...
P46960       4 LLRDKHISYLHDignrt-deldfWLKEHLHVSAIYWSCMS----------------FWLLKKKdq------------idK 54   fission yeast
EAN31245     7 LDLEKIYNFLLNslddr-vsiegFAFEPIKLGGLYWSLTA----------------ISLLKGPpnsi--------vhpkT 61   Theileria parva
XP_769329   16 RFLIGQMEEIQNptl-----melVGLSHTKLSGLYWVLCSi---------------FILHGRQptdvflqqlvpgtvitI 75   Giardia lamblia ...
CAD26435    43 LEVDRHSAFIKEtiktr--nflyYLTEPFRLNTIYWSVNA----------------LSMLGRGemq-----------emR 93   Encephalitozoon ...
NP_703687    7 FVQEKHIQYLESyttik-naeelIFNETLKMCGVFYFLCSckilshtiekkeefinFILKCQNvdggf------gnninY 79   Plasmodium falci...
Feature 1                                                  # ## ##                             
1LTX_B      69 EEILVFIKscq---------hecGGVSAs----------iGHDPHLLYTLSAVQILtlydsIHVIn-------------- 115  Norway rat
CAD98718    71 FEFVESCKvfvdg------dvtmVGYSQn----------kGLNANIVSTHYALLILimigkLDQAd-------------- 120  Cryptosporidium ...
XP_327795   65 AETIDFVLscq---------henGGFGAa----------pGHDAHMLSTVSAVQILa---mVDAFddlet--------rg 114  Neurospora crassa
AAX80948    59 EELVDFVVkcw---------nsdGGFGGn----------iGQDSHMLYTLSAVQLLcllhaTDAId-------------- 105  Trypanosoma brucei
XP_648235   55 ERLTQFCMkcfd--------ektGGFGGn----------iGYDGHIYNTLSAIQVLc---iLGKRsl------------- 100  Entamoeba histol...
P46960      55 ERIVSFLLscl---------tesGGFACy----------pGHDDHITNTVYAVQVLamldsLHVVd-------------- 101  fission yeast
EAN31245    62 KETLESMSikflsl----sknddGAFGFg----------pKHPSNLIATHYAILTLalinrLDFIn-------------- 113  Theileria parva
XP_769329   76 DRLHQFVKdclvvqptkgnqseiAGFSGs----------pGHDMHLVHTTSGLQCLl---lLNKFsetv---------sp 133  Giardia lamblia ...
CAD26435    94 DRVVGYVMrcr---------nddGGFGGc----------eGYSSNITSTFNALQILy----IYHIpy------------- 137  Encephalitozoon ...
NP_703687   80 DSHIVSTHhail-------slllLNYSFdkineymdkannHHDINNTNDNNKVDLNnt-nnNNKLdfnntndnnynvysk 151  Plasmodium falci...
Feature 1                                              #  ##                                   
1LTX_B     116 --VDKVVAYVQSL----------QKEDGSFAGDiWGEIDTRFSFCAVATLALL---------------------GKLDAI 162  Norway rat
CAD98718   121 --SAKISKWISSL----------QNKDGSFRCDqYLETDCRFSYCALSSLTIL---------------------NRINEI 167  Cryptosporidium ...
XP_327795  115 rgKAQVGKYIASLq---------NRQTGTFAGDeWGEEDTRFLYGAFNALSLL---------------------GLLHLV 164  Neurospora crassa
AAX80948   106 --AEKCARWVASM----------QLPDGSFQGDeWGEVDTRFVYVAMNCLQLL---------------------GKLELI 152  Trypanosoma brucei
XP_648235  101 ipVEQVANFIKSC----------QREDGSFVADhWGESDNRFVYCAVLALTLI---------------------GKLDVI 149  Entamoeba histol...
P46960     102 --KDKVASYIIGL----------QNEDGSMKGDrWGEIDARFLYSGINCLAIL---------------------GKLDYL 148  fission yeast
EAN31245   114 --RNDIIKFISTLqvefltvicfQNKDGSFSSDkYGESDCRNSYSALVCLSLL---------------------AGLNNI 170  Theileria parva
XP_769329  134 elGVTLANTIIDL----------QAEDGGFYGDyTKERDTRFCYCAVLSLTILlkrvp-----------sliglHLNNLI 192  Giardia lamblia ...
CAD26435   138 -hDRSTAMFISGL----------LQPAGYFHNDgYGETDTRISCCAVLGLHLLslmergdfdprslsrpickvfLAEAGV 206  Encephalitozoon ...
NP_703687  152 siRENTCKYILTL----------FNEDGSFKGDmWGEVDTRFVYSAVSCLTIL---------------------NKINLV 200  Plasmodium falci...
Feature 1                                  # #   #                                           # 
1LTX_B     163 NVEKAIEFVLSC-MNFDGGFGcrPGSESHAGQIYCCTGFLAITSQLHQVN-SDLLGWWLCERQLp-SGGLNGRPEKLPDV 239  Norway rat
CAD98718   168 DIIGARSYLLRC-YNSDGAFGgvPCSESHAAYTYCCVVSLALLNSLDIIN-IDRLAFWLCERQLl-CGGFNGRPEKAPDV 244  Cryptosporidium ...
XP_327795  165 DVDKAVDHIAAC-ANFDGGYGvsPGAESHSGQIFTCVAALTIAGRKELID-VDRLGRWLSERQIa-GGGLNGRPEKKEDV 241  Neurospora crassa
AAX80948   153 NVKAAVEWMLRC-QNWDGGFGlaPGAESHAGQIFCCVGSLRIAGALDRID-KEQLAGWLAMRQLp-SGGLNGRPEKKADV 229  Trypanosoma brucei
XP_648235  150 NTEAAVNYLMKC-MNFDGAFGciPGAESHAGQTFTVVACLALLNRLDVLD-KEKLAWWLCERQTv-TGGLNGRPEKLPDV 226  Entamoeba histol...
P46960     149 NKNTAVDWLMKC-YNFDGGFGlcPGAESHGAMVFTCVAALKILNKLDLID-EELLGWWISERQVk-GGGLNGRPEKLPDS 225  fission yeast
EAN31245   171 DLRKAVDFILSC-RNFDGGFAwqPMNESHAAACFCCIGALAELDLLSLID-SDKLGFWLSERQTtvDGGLNGRPEKKSDI 248  Theileria parva
XP_769329  193 DVDALRSYLLRC-LNSDGGFGttPGDESHGGQTFCCVATMHLLDSLHLIPnIQRSLFLLSNRQCa-NGGLCGRPDKEPDT 270  Giardia lamblia ...
CAD26435   207 DPGAIVLYTQKC-YNLDGGFGavKGAESHAAQVFCCLSTLRSLGALETVD-REEVARFIATKQAs-SGGLSGRVSKKEDV 283  Encephalitozoon ...
NP_703687  201 CVDKISSYLLTNyAICENGFSwvSGNEPHAASVFCCIATLFLIQKLYLIN-ENKLAHWLSLRQTt-NGGFNGRAEKLTDT 278  Plasmodium falci...
Feature 1      ##  #                                                          #        ##      
1LTX_B     240 CYSWWVLASLKIIGRl-----------------------hWIDREKLRSFILaCQDEETGGFADRPGDMVDPFHTLFGIA 296  Norway rat
CAD98718   245 CYSWWIFSLLYFLGRa-----------------------nYIDKNLLEEYIFcSEDISKGGFSDRPGNVSDVFHTFFGIS 301  Cryptosporidium ...
XP_327795  242 CYSWWVLSSLEMIGKt-----------------------hWIDKAKLTSFILsSQDTDKGGISDRPGDMVDVWHTCFGIA 298  Neurospora crassa
AAX80948   230 CYSWWVVSSLSMLGYt-----------------------eWIDRHALFRFVLaCQDSEDGGIADKPGNQADVYHTFYGLC 286  Trypanosoma brucei
XP_648235  227 CYSWWVLTSLIILGKv-----------------------dWIDKDALEKFILqAQDMEDGGIADRPGDCADIYHTYFGIA 283  Entamoeba histol...
P46960     226 CYGWWDLSPLAIIGKl-----------------------dWIDRNQLIDFLLgTQDADSGGFADRKEDATDVYHTCFSLA 282  fission yeast
EAN31245   249 CYSWWILSVLCNIGRl-----------------------dWVNHDQLVEFIIeSQSQSDGGIAYFPGYMGDVCHTFFALC 305  Theileria parva
XP_769329  271 CYSWWIGSPAYILLDyllnannsraaewdekcvdnikakmIFNIDALLRFITvCINPKVSGVADRPENYPDEYHTFFSLA 350  Giardia lamblia ...
CAD26435   284 CYSFWAYSSLVLIGKe-----------------------cYVNQEELTRFIF-SCQGPSGGFSDRPGNETDLYHLMFALA 339  Encephalitozoon ...
NP_703687  279 CYSWWIFSTLIVLKKy-----------------------nWINKNALKNYILlCQDIEKGGISDNPDCLPDICHTFFGLA 335  Plasmodium falci...
Feature 1           
1LTX_B     297 GLSLL 301  Norway rat
CAD98718   302 ALSLI 306  Cryptosporidium parvum
XP_327795  299 GLSLL 303  Neurospora crassa
AAX80948   287 GLSLL 291  Trypanosoma brucei
XP_648235  284 GLSLM 288  Entamoeba histolytica HM-1:IMSS
P46960     283 GLSLL 287  fission yeast
EAN31245   306 GISLI 310  Theileria parva
XP_769329  351 AMSLF 355  Giardia lamblia ATCC 50803
CAD26435   340 GLSLL 344  Encephalitozoon cuniculi GB-M1
NP_703687  336 ALSLI 340  Plasmodium falciparum 3D7

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