1G5I


Conserved Protein Domain Family
Pol_gamma_b_Cterm

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cd02426: Pol_gamma_b_Cterm 
Click on image for an interactive view with Cn3D
C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Statistics
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PSSM-Id: 239106
Aligned: 8 rows
Threshold Bit Score: 186.085
Created: 14-Apr-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimerizationputative
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:dimerization interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                  #  ##  ## #   ## ##
1G5I_D    312 FQLAENsf---------aRKKSLQRKVLkLHPCLAPIKVALDVGKGp------TVELRQVCQGLLNELLENGISVWPGYS 376 house mouse
AAD50382  354 FQLTENsf---------tRKKNLHRKVLkLHPCLAPIKVALDVGRGp------TLELRQVCQGLFNELLENGISVWPGYL 418 human
XP_415670 417 LQLAENpl---------tTKKNSQRKVLkLHPCLTPIKVALDVGKGp------TTELRQVCQGLFNELSENRIAVWPGYL 481 chicken
17367180  332 LQQTEApa---------vRGQYHQREVLkLHPTLAPIKVAVDMGKGp------TGELRLVCQGLSSELREQGVYVWPGYQ 396 African clawed frog
EAL33300  229 ATCALLld---------gCDHGRETQSLlLNRMLAPYQCGIACLEVdp---aqAGDLRDLCLHIKDVLQRAGLRLCQGVG 296 Drosophila pseudoo...
CAG10774  271 GMMAFLsnslqqlkkdnsKHRLQHRQVLkLHPALAPVKVALEIGRGa------TAELRQLCEGLMQELKEAQISVWPGYL 344 Tetraodon nigrovir...
7298102   358 TTCALLld---------gCDHGRDSQSLlLHRVLAPYQCGIACVESds---elSADLSDLCQHLKHVLNHAGLRLSEGDG 425 Drosophila melanog...
EAA04849  235 AVLAILmd---------aLECAASERCVkIHRKIAPYKCGIVCAGEdatdanvRNDLIDLSKHLTYVLRAANLPVHESFS 305 Anopheles gambiae ...
Feature 1     ##                                                                
1G5I_D    377 ETvh---ssLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLAS 439 house mouse
AAD50382  419 ETmq---ssLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 481 human
XP_415670 482 ETtq---vsLEQLYTKYDEMGVLFMILISDSTLENGVVQLRSRDTTMKEMMHISRLKDFLTKYIAS 544 chicken
17367180  397 ETlh---gsLEQLYTKYDKMGVLFTVLVSESTLENGLLQVRSRDTTLKETIHVSKVKDFLVRYIAA 459 African clawed frog
EAL33300  297 YAlskdasqLTEHVDKSDMLGVPYTLLLSEQTLQNGLLQLRSRDTRLAETIHISDVPDYLLNIFKH 362 Drosophila pseudoobscura
CAG10774  345 STqa---ssMEQLTAKYDEMGVLFTVVISENTLENGLLQVRSRDTTIKETVHISESRNYIFRYISA 407 Tetraodon nigroviridis
7298102   426 IRttknashLAEHLLETDMLGIPYTLVINEQTLRNGLMQLRSRDTRLAETIHISDVPDYLLNIFKN 491 Drosophila melanogaster
EAA04849  306 FEq------ASPALDRLDQIGVPYVLLLSAGTLRTGLLQLRSRDTTLSETIHLSDLPHYLERIINA 365 Anopheles gambiae str. PEST

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