1FP3


Conserved Protein Domain Family
AGE

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cd00249: AGE 
Click on image for an interactive view with Cn3D
AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Statistics
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PSSM-Id: 238153
Aligned: 15 rows
Threshold Bit Score: 289.647
Created: 4-Sep-2001
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activedimerization
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active cleft [active site]
Evidence:
  • Comment:this cleft is proposed to bind N-acetyl-d-glucosamine (GlcNAc) in the presence of ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #   #  #             
1FP3_A      4 ERETLQAWKERVGQEL-DRVMAFWLEHSHDRe-HGGFFtclgrd----grvydDLKY-VWLQGRQVWMYCRLYRklerfh 76  pig
NP_521179  16 LPDAAAALEAFARHYD-DVLLPMWLGPGWNAq-AGLCYealvaeg-drlvpatTSRYrAMACARQLYTFARASVlsk-rh 91  Ralstonia solanace...
AAB03013    3 IKGMKWFNTLSHNRWL-EQETDRIFDFGKNSvvPTGFGwlgnkg----qikeeMGTH-LWITARMLHVYSVAAAmg---- 72  Escherichia coli
1710606     4 ERETLQVWKQRVGQEL-DSVIAFWMEHSHDQe-HGGFFtclgrd----gqvydHLKY-VWLQGRQVWMYCRLYRtferfr 76  Norway rat
7470823     2 IAHRRQELAQQYYQALhQDVLPFWEKYSLDRq-GGGYFtcldrk----gqvfdTDKF-IWLQNRQVWQFAVFYNrle--p 73  Synechocystis sp.
BAB75394    1 MGKNLQALAQLYKNALlNDVLPFWENHSLDT--EGGYFtcldrq----gkvydTDKF-IWLQNRQVWTFSMLCNqle--k 71  Nostoc sp. PCC 7120
13476320  366 VIESGAWRRRVHHWLF-QETLPLWSTSGVDEr-HGGFHealgfd----gaplmKPKR-MRTQARQVYAFAVAKEhg---w 435 Mesorhizobium loti
15140546  365 VLQPGAWRERVAHWLF-EETLPLWSTAGVDEr-HGGFHealsfe----aapliKPKR-MRTMARQVYAFSVAKLrg---w 434 Sinorhizobium meli...
NP_532830  10 NWNTLPWHRQWLVKQV-EGLFDFFQHRALNP--AGGFFdldakga--plqandPVRG-IHASARMVHCFSIGHLlg---- 79  Agrobacterium tume...
NP_440970  99 PAEYVFEKQDWWIKQV-NSLGKFFIKAQFGDg-EIDYRhyrtdlsmsgerstvNFRQeTDTISRLVYGFATAFMmt---g 173 Synechocystis sp. ...
Feature 1                                                                 #   #  #            
1FP3_A     77 rPELLDAAKAGGEFLLrhARVApp---eKKCAFVLTr------------DGRPVKVQrsIFSECFYTMAMNELWrvtaea 141 pig
NP_521179  92 aAVCAERAAALCHALDtrFRDTi----hGGWLFAIDs------------ALAPQDTTkdLYTHAFVLFAAAHWLavsddp 155 Ralstonia solanace...
AAB03013   73 rPGAYSLVDHGIKAMNgaLRDKk----yGGWYACVN-------------DEGVVDASkqGYQHFFALLGAASAVttg-hp 134 Escherichia coli
1710606    77 rVELLDAAKAGGEFLLsyARVApp---gKKCAFVLTq------------DGRPVKVQrtIFSECFYTMAMNELWkvtgem 141 Norway rat
7470823    74 kPQWLEIARHGADFLArhGRDQd-----GNWYFALDq------------EGKPLRQPynVFSDCFAAMAFSQYAlasgaq 136 Synechocystis sp.
BAB75394   72 rENWLKIASNGAKFLAqhGRDAe-----GNWYFALTr------------GGEPLVQPynIFSDCFAAMAFSQYAlasgee 134 Nostoc sp. PCC 7120
13476320  436 tGPAERLIAHGIDFMAgkGRTEr-----GGWVRTLNv------------DGAVADATedAYDHSCVLLALAHAHmsg-nt 497 Mesorhizobium loti
15140546  435 dGDADGLIGHGIAFMEk-GRTQr-----GGWARVLQe------------DGTIADACedAYDHACVLLMLAHAYqag-np 495 Sinorhizobium meli...
NP_532830  80 rPGCGDIVDHGMTYLWnnHRDGe----hGGYFWQVN-------------DAGPVDATkqGYGHAFVLLAASSAKtvg-hp 141 Agrobacterium tume...
NP_440970 174 dDQFLEAAEKGTEYLRehMRFVdkdediIYWYHAIDvqgekeqkifaseFGDDYDAIp-AYEQIYALAGPIQTYrctgdr 252 Synechocystis sp. ...
Feature 1                                                            #  ##  #                 
1FP3_A    142 RYQSEAVDMMDQIVHWvr----eDPSGL--GRPQlpg---------avASES--MAVPMMLLCLVEQLgee--deELAGR 202 pig
NP_521179 156 RAAALMEEAHDVVSRRfaregamPLPVAa-MDAAfa-----------aPLAGveQNPVMHLTEAYLAAaa---lpDAPAW 220 Ralstonia solanace...
AAB03013  135 EARKLLDYTIEIIEKYfws--eeEQMCLesWDEAfsk---------teEYRG--GNANMHAVEAFLIVyd----vTHDKK 197 Escherichia coli
1710606   142 HYQREAVEMMDQIIHWvr----eDPAGL--GRPQlsg---------tlATEP--MAVPMMLLNLVEQLgee--deEMTDK 202 Norway rat
7470823   137 EAKAIALQAYNNVLRRq-----hNPKGQ--YEKSypg---------trPLKS--LAVPMILANLTLEMewllpptTVEEV 198 Synechocystis sp.
BAB75394  135 WAKDVAMQAYNNVLRRk-----dNPKGK--YTKTypg---------trPMKA--LAVPMILANLTLEMewllpqeTLENV 196 Nostoc sp. PCC 7120
13476320  498 DALRLGEETFAFLDAHl-----eDSRMTg-FLETsd----------geGERR--SNPHMHLLEAFLAWyq----aTGERA 555 Mesorhizobium loti
15140546  496 DALRLGQETFAFLDEHl-----eDDRLTg-FLETsd----------gtELRR--SNPHMHLLEAFLAWya----aTGERG 553 Sinorhizobium meli...
NP_532830 142 LADQMLADITEVLETRfw---eeKHGAI--AEEFnrdw------spidNYRG--QNSNMHLTEALMAAye----aTGDSN 204 Agrobacterium tume...
NP_440970 253 RILHDAEQTIKLFDKFfld--ksEYGGY--FSHLdplmldprseslgpNKARknWNSVGDHAPAYLINlw---laTGEQK 325 Synechocystis sp. ...
Feature 1                                                             #  #  ##                
1FP3_A    203 YAQLGHWCARRILQHVQRDGQAVLe-NVSedgee----lsgclGRHQN------PGHALEAGWFLLRHSsrs-----gda 266 pig
NP_521179 221 AEAGVHALAEGMAARFIDARTGCIa-ELPvdq--------adtDNRIE------PGHQFEWFYLVRAHAdvftr--sepg 283 Ralstonia solanace...
AAB03013  198 WLDRAIRVASVIIHDVARNNHYRVn-EHFdtqwnplpdynkdnPAHRFrafggtPGHWIEWGRLMLHIHaalearceqpp 276 Escherichia coli
1710606   203 YAELGDWCAHRILQHVQRDGQVVLe-NVSedgke----lpgclGRHQN------PGHTLEAGWFLLQYAlrk-----gdp 266 Norway rat
7470823   199 LAQTVREVMTDFLDPEIGLMREAVtpTGEfvd--------sfeGRLLN------PGHGIEAMWFMMDIAqrs------gd 258 Synechocystis sp.
BAB75394  197 LSATVQEVMSDFLDKERGLMYENVapDGShid--------cfeGRLIN------PGHGIEAMWFIMDIArrk------nd 256 Nostoc sp. PCC 7120
13476320  556 HLRRAARIIDLFRSHFFDAESWTLg-EYFdaewkp---stgekGSWTE------PGHHFEWASLLVDFAers------gq 619 Mesorhizobium loti
15140546  554 YLRRAARIIDLFRSHFFDTESWTLg-EYFdeawnp---avgpkGQWTE------PGHHFEWASLLVEFAaks------rq 617 Sinorhizobium meli...
NP_532830 205 YLTKAERIADLVIRRRAGELDFRVp-EHFdenwtl---dkayrGNEMFrpsgstPGHWLEWARLILQLWvlge----rqh 276 Agrobacterium tume...
NP_440970 326 YADMLEYTFDTIEKYFPDYDHSPFvqERFyedws----hdttwGWQQNra---vVGHNLKIAWNLMRMNslk------sk 392 Synechocystis sp. ...
Feature 1                                                       ##   #                        
1FP3_A    267 KLRAHVIDTFLLLPFrsGWDADHGGLFy----FQDAdglcptqleWAMKLWWPHSEAMIAFLMGYSEsg-dpALLRLFYQ 341 pig
NP_521179 284 RQLADTLGRAVDTACrlGVDAKTQGVCls--lELDGgm------rDASQRIWAQTEYGRALSLCSEThg--tLLASTLSL 353 Ralstonia solanace...
AAB03013  277 AWLLEDAKGLFNATVrdAWAPDGADGIv---yTVDWegk----pvVRERVRWPIVEAMGTAYALYTVtg-drQYETWYQT 348 Escherichia coli
1710606   267 KLQRHIIDKFLLLPFhsGWDPEHGGLFy----FQDAddlcptqleWNMKLWWPHTEAMIAFLMGYRDsg-dpALLNLFYQ 341 Norway rat
7470823   259 RQLQEQAIAVVLNTLeyAWDEEFGGIFy----FLDRqghppqqleWDQKLWWVHLETLVALAKGHQAtg-qeKCWQWFER 333 Synechocystis sp.
BAB75394  257 SKTINQAVDVVLNILnfAWDKEYGGLYy----FMDAaghppqqleWDQKLWWVHLESLVALAMGYRLtg-reVCWEWYQK 331 Nostoc sp. PCC 7120
13476320  620 AELSGFARKLYASAIanGLNRATGLAYg----AVSRqgl----plDLISRSWPQAEAIKAAIALDGSgg--pDLKPEIEA 689 Mesorhizobium loti
15140546  618 TDLIAFARKLYASAIatGLNRSTGLAYg----AVSRaal----plDLISRSWPQAEAVKAALALEGTgg--pDLKPEIEA 687 Sinorhizobium meli...
NP_532830 277 DWMPVAAKSLFVQSMalGWDREKGGFFy----TLDWndn----pdKRAKLWWPMCEAAGAAHFLNENlpadaFYEDSYRR 348 Agrobacterium tume...
NP_440970 393 EKYVELAKKIADLMPavGSDQQRGGWYdvverLLDNhsrchqfvwHDRKAWWQQEQAILAYLILAGIld-deEYHRHGQE 471 Synechocystis sp. ...
Feature 1                                              #   ##  #            
1FP3_A    342 VAEYTFrqFRDPe-YGEWFGYLNREGKVALtik-----ggpFKGCFHVPRCLAMCEEMLSAL 397 pig
NP_521179 354 WSARFLheRGWHe-VIDATGRRLRDDMPSStp-------yhITTFYEAVRAALAARPTVVPQ 407 Ralstonia solanacearum
AAB03013  349 WWEYCIkyLMDYe-NGSWWQELDADNKVTTkvw------dgKQDIYHLLHCLVIPRIPLAPG 403 Escherichia coli
1710606   342 VAEYTFhqFRDPe-YGEWFGYLNQEGKVALtik-----ggpFKGCFHVPRCLAMCEQILGAL 397 Norway rat
7470823   334 VHDYAWshFADPe-YGEWFGYLNRRGEVLLnlk-----ggkWKGCFHVPRALWLCAETLQLP 389 Synechocystis sp.
BAB75394  332 MHDYSWqhFADPe-YGEWFGYLNRRGEVLLnlk-----ggkWKGCFHVPRALYLCWQQFEAL 387 Nostoc sp. PCC 7120
13476320  690 RVGRLFrwHIDPapLGLWIDRIDERGRSLAsd-------vpASIFYHLVCALTQYLDRTAKK 744 Mesorhizobium loti
15140546  688 RVGRLFrwHIDPapLGMWIDRVDEKGSAVAte-------vpASIFYHLVTALMQYLDKTEEA 742 Sinorhizobium meliloti
NP_532830 349 IWSTIAnnFIDHe-NGGWHEELTEDLVPAHtlf------pgKGDIYHALQACLIPLFPAAGS 403 Agrobacterium tumefaciens str. C58 (...
NP_440970 472 ASAFYNawFLDLe-DGGIYFNVLANGIPYLaggnerakgshSMSGYHSFELCYLAAVYTNFL 532 Synechocystis sp. PCC 6803

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