Conserved Protein Domain Family
YlmH

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COG2302: YlmH (this model, PSSM-Id:225185 is obsolete and has been replaced by 441877)
RNA-binding protein YlmH, contains S4-like domain [General function prediction only]
Statistics
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PSSM-Id: 225185
Aligned: 11 rows
Threshold Bit Score: 269.576
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15673847   3 TENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLAN-KRNVQIFSSEELARTELVKIILAPDFYV 81  Lactococcus lactis ...
15615110   1 -MDIYQHFRSEERPFIDQVMEWKADVSMQYTWKRTDFLDPREQEIVDALVGrNDDVSVSFWGGSEHAERKRACLIPPYLE 79  Bacillus halodurans
16078605   1 MSDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTG-QADVGLAFSGGYDRAERKRAILFPEYIT 79  Bacillus subtilis
15805813   1 -----------MLTVMKQKLSTLVAQAGGGRVVRTPFVDGDE--IDRRLLS-EEGVRHKIAGGFPDARRVVLTLYPAHIP 66  Deinococcus radiodu...
19703517   1 -----------MNENLEKIENYIKLAEKTDTIIYSNQFFPISQLNNLKYSG----LKFSFKGLNEECEKKLLAVYPECFT 65  Fusobacterium nucle...
15926774   1 ---------------------------------------------MEVICGsYEDLNVSFYGG-PNAERKRAIISPNYYE 34  Staphylococcus aure...
15901497   2 NKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAK-TYGLACSSSGEFVSSEYVRVLLYPDYFQ 80  Streptococcus pneum...
15675416   4 HSKIYQHFHQEEYPFIDRMSDMINRVEDYYLLEVTEFLNPREVMILKSLIA-LTDLKMFVSTDYYPSEYGRVIIAPGYYD 82  Streptococcus pyoge...
17230382   2 LPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSrLTDVQLVAWGGYPQAERQRLAIARAELP 81  Nostoc sp. PCC 7120
16801200   1 MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRYITETVVGgYEHIGVQFFGGVPHAERRRALIYPDYYT 80  Listeria innocua
16330752   2 LPREALLKGAPDREAIARVIDQAEQALRTWEVVVSDFCAPPLIAEIQTRFDsLTELHFLPWGGYPQAERQRLAIARAEIP 81  Synechocystis sp. P...
15673847  82 LDREDFDICLLEINYASKFVELSHAQVLGTFLGqAGVKRQELGDIIVSD-NKIQVFVSKHLVESFKA-IEKIGRAAIKIQ 159 Lactococcus lactis ...
15615110  80 LAEEDYGLTLFELSYPKKFLTIDHRQVLGACMS-LGVKREKFGDILVAD-ERIQLVVATEIAEFVRLhLTSVGKAQVEMV 157 Bacillus halodurans
16078605  80 PEESDFELQAFNVRYADKFVSVDHRSLLGALMG-IGLKRQKFGDIVFSE-TAVQLIVSADTADFVAAqLTQAGKAAVSLE 157 Bacillus subtilis
15805813  67 --DVDAGVQVLRVSPAPGGVPWDEQDFAVQLRR-LELPEDQLGDVREER-GGAFLIAATGKAAQALAgLTELGGREVDVE 142 Deinococcus radiodu...
19703517  66 EDYLYFPVKYFKIIKKSKFISLEHKHYLGNILS-LGIKREILGDLIVKN-DECYGIILENMFDFLKEnLLRINSSPVEII 143 Fusobacterium nucle...
15926774  35 PKESDFELTLMEIEYPEKFVTLKHQHILGTLMS-LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLeLQRIKGASVKLY 111 Staphylococcus aure...
15901497  81 PEFSDFEISLQEIVYSNKFEHLTHAKILGTVINqLGIERKLFGDILVDE-ERAQIMINQQFLLLFQDgLKKIGRIPVSLE 159 Streptococcus pneum...
15675416  83 LEQSDFQIALVEISYQAKFNQLTHSQILGTLINeLGVKRNLFGDVFVEM-GYAQLMIKRELLDYFLGtITKIAKTSVKLR 161 Streptococcus pyoge...
17230382  82 LDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLG-TGIVREKTGDIIVLGeRGAQAIVVPELAEFLQIhLNQVRSVPVKTQ 160 Nostoc sp. PCC 7120
16801200  81 PTEADFEVALFHIRYPVKFTTLTHQKILGTLMS-LGMKRDIFGDILNNG-SEWQLLVESTMKDYLTLqLEKIGKVNVMLE 158 Listeria innocua
16330752  82 LETEQIPLTALDVAGNFLFDPASHRDFLGALLG-TGLVREKVGDIILLGeRGAQAIVVPEVAEFISLhLTQVRTVPVKAK 160 Synechocystis sp. P...
15673847 160 EISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKI 239 Lactococcus lactis ...
15615110 158 ELGFEQMLVTTESWHERTATVSSLRLDAVIGEMLSLSRAKAAELVEKGRVKVNWKLVESGALTLQAGDHISVRGFGRHKL 237 Bacillus halodurans
16078605 158 KIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSL 237 Bacillus subtilis
15805813 143 EVGESAGKGS--K--VREVVVPSMRVDVVGAKGFGVSRAYFQQGIDGGKVRLNGQSAR-ASSEIREGDSLSAEGLGRIDF 217 Deinococcus radiodu...
19703517 144 EIDEREVPEN--EFKELNIRLSSLRLDSLVSELTNLSRAVSVNYIDLGNVQVNYEIQREKSYKVSLGDTIIIKKYGKFRI 221 Fusobacterium nucle...
15926774 112 TIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQGFGRAHI 191 Staphylococcus aure...
15901497 160 ERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239 Streptococcus pneum...
15675416 162 EVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRVANKASDNLVIGDMVSIRGHGRFTL 241 Streptococcus pyoge...
17230382 161 PIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV 240 Nostoc sp. PCC 7120
16801200 159 ETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKV 238 Listeria innocua
16330752 161 AIALEELKIRPPKTKEMTTVEASLRLDAIASAGFGLSRSKMADAVTQGNVQVNWKPVTQSSYALKAGDLVTYRGKGRLEI 240 Synechocystis sp. P...
15673847 240 LRILDFTKKGKQRVEIELIR 259 Lactococcus lactis subsp. lactis
15615110 238 LEVEGKTKKDKFRLRIGRMG 257 Bacillus halodurans
16078605 238 TKIEGKTKKDKWRVTFERQK 257 Bacillus subtilis
15805813 218 KRVVNETRRGNFKVELDVHK 237 Deinococcus radiodurans
19703517 222 EEENGLTKKDKLKLIVRKYI 241 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
15926774 192 TDLGGKTKKDKTHITYRTLF 211 Staphylococcus aureus subsp. aureus N315
15901497 240 LQDKGQTKKEKKKITVQLLL 259 Streptococcus pneumoniae TIGR4
15675416 242 LADNGVTKHGKQKITLSKMI 261 Streptococcus pyogenes M1 GAS
17230382 241 GEIA-VTKKERYRVQLTRYM 259 Nostoc sp. PCC 7120
16801200 239 LSTGGRTKKDKIRIEIGYLK 258 Listeria innocua
16330752 241 GEIT-VTKKERYRIQLTRYL 259 Synechocystis sp. PCC 6803
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