Conserved Protein Domain Family
TrmA

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COG2265: TrmA (this model, PSSM-Id:225174 is obsolete and has been replaced by 441866)
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 225174
Aligned: 67 rows
Threshold Bit Score: 288.445
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
464650   139 SReqvlndvtsilndksstdgpivlqyhrEVKNVKVLEITSNGNGLALIDnpvETekkqVVIIPFGLPGDVVNIKVFKTH 218 baker's yeast
19553107   8 AKg--------------------------DIISVEVLRPAHGGEGIGHHD---GR----VIFVKGGIPGDVVDVEIAQLK 54  Corynebacterium glu...
1723812   13 NV---------------------------QTITADILDLDYQGLGVAKIN---GK----TWFIENALPHEKVECRILEDK 58  Haemophilus influenzae
15842227  34 GDd--------------------------AVNLTLVTGAPANGGSCVAHH---EGr---VVFVRYALPGERVRARVTAQR 81  Mycobacterium tuber...
20140268  22 PVg--------------------------KKQRLTIERLAHDGRGIAHEA---Gm----TWFVSGGLPGEELEARVLGAR 68  Pseudomonas aeruginosa
20140227  13 RN---------------------------TTFVAEILDLDYQGRGVAKVQ---GK----TWFIENALPQEKVEVRIVDEK 58  Pasteurella multocida
20140047   1 -Mp--------------------------VAGPLEIVSLDNEARGVGRLSnedGTpg-kVVFVEGALPGERVTYRSHRAK 52  Ralstonia solanacearum
15609826   5 GDd--------------------------AVNLTLVTGAPANGGSCVAHH---EGr---VVFVRYALPGERVRARVTAQR 52  Mycobacterium tuber...
20140289  13 LDt--------------------------KHQPVTIERLDHQGSGLAFLH---KK----PLFVDGALPGEEVLIQLTENK 59  Vibrio cholerae
20140309   7 FDr--------------------------TSFQTQIIDLSHDGRGVARPH---GEgd-kVTFVTGALPGEVVIVEPVARN 56  Xylella fastidiosa
464650   219 PYYVESDLLDVVEKSPMRRDdlIRDKYFGK--SSGSQLEFLTYDDQLELKRKTIMNAYKFFAPrlvaekLLPPFDTTVAS 296 baker's yeast
19553107  55 KKWARGEVVKVTTASADRVD--SRCPAAAAg-AGCCDYAELNPTVELEIKSRVLRDQLERIGGi-----DELPEFELQDL 126 Corynebacterium glu...
1723812   59 RQYGHAIVKKWRVKSPERLE--PKCAHFMR--CGGCQGQHIPIEMQRKAKESALFKRLSKLQ-------SEPISFQPMIC 127 Haemophilus influenzae
15842227  82 GSYWHAEAFEVIDPSPDRIG--SLCSIAGAdgAGCCDLAFAAPEAARTLKAQVVANQLERLGRh-----SWQGEAQPLSD 154 Mycobacterium tuber...
20140268  69 SKVVDARSERLFSSSDLRRR--EPCTVAGR--CGGCTLQHLEHGEQLALKQRTLQEQLQRFAG------IEPEEWAAPLV 138 Pseudomonas aeruginosa
20140227  59 RHYGHGISCKILTPHPDRQS--AKCAYYAQ--CGGCQSQHIPIDMQRQAKQQALFQRLQQLQ-------PQ-ATFMPMIV 126 Pasteurella multocida
20140047  53 PSYEQATLVDILRQSASRVT--PQCRFFGT--CGGCSMQHLDSRAQIAIKQRVLEDDLWHLAK------LRPDVVFRPIA 122 Ralstonia solanacearum
15609826  53 GSYWHAEAFEVIDPSPDRIG--SLCSIAGAdgAGCCDLAFAAPEAARTLKAQVVANQLERLGRh-----SWQGEAQPLSD 125 Mycobacterium tuber...
20140289  60 SKYARGQLIKVLKPSAERVA--PFCAHYAQ--CGGCDLQHLDRAGQIHHKQQALSQLMVKFA-------GQSLALSAPVC 128 Vibrio cholerae
20140309  57 RHFDEARVVEVLQASPQRVI--PRCSHFGV--CSGCVLQHLAEDAQVVSKQRVLLESLERIGR------VSPERVLPALA 126 Xylella fastidiosa
464650   297 PLQFGYRTKITPHFDMPKRKqkELSVrpplGFGQKGrpqwRKDTLDIgghgsildiDECVLATEVLNKGLTNERRKFEQE 376 baker's yeast
19553107 127 EPTAGWRTRVRLGVDASG------RA----GFRKLK----SNELVTE---------VACSQVVPELLEG--LVGEGARRF 181 Corynebacterium glu...
1723812  128 GDAWAYRRRVRLSLWFNPSTk-QIEM----GFRQKN----TNDLIPV---------QSCEVAEPAINYLLPKLTALLEKF 189 Haemophilus influenzae
15842227 155 AGPTGWRIRVRLDVGADRRP----------GFHRYH----SGELVTD---------LDCGQLPVG------MLDGLVAAD 205 Mycobacterium tuber...
20140268 139 GPEFGYRRRARIAVRWDARAr-RLDV----GFRASA----SQEIVAF---------DECLVLVPPLQTIARALPALLQDF 200 Pseudomonas aeruginosa
20140227 127 AAPWHYRRRVRLSVRFHPKSk-QLAM----GLRQRN----TQQIVNL---------QHCDVLEIPLSQLLPKLHLLFSTW 188 Pasteurella multocida
20140047 123 GPDWGYRYRARLTVRHVAAKg-GVLV----GFHERK----SSYVADM---------TSCEVLPPHVSALLVPLRELVGRL 184 Ralstonia solanacearum
15609826 126 AGPTGWRIRVRLDVGADRRP----------GFHRYH----SGELVTD---------LDCGQLPVG------MLDGLVAAD 176 Mycobacterium tuber...
20140289 129 SDDQGYRRRARLSLMWDKKTq-QLQL----GFRRKQ----SKAIVNV---------THCPVLEPSLNALLPDLNALLSEW 190 Vibrio cholerae
20140309 127 AESWGYRRKGRFSVRWVEKKg-RTLV----GFREHD----PRFVADV---------SVCHTVVPQVGEKIALLATLLNSL 188 Xylella fastidiosa
464650   377 FKN-YKKG--ATILLREN--TTILDPSKptLEQLTEEASRD-ENGDISYVEVEDKK-NNVRLAKTCVTNPRQ-IVTEyvd 448 baker's yeast
19553107 182 TPG----VeiIAAIDDAGq-RHVVESRK---APRGRR-------TETVLKVLEGTGeVEQKVGDYTWKFPVS-------- 238 Corynebacterium glu...
1723812  190 SAPkQ-LGhiELVAADNGvaMLLRYTKN--LAEIDRTLLLKfAEQEKLMLFLQSD--KGIEQIYGDAPYYQF---SD--- 258 Haemophilus influenzae
15842227 206 WPP---EAqlYVALDDDGe-RHVVCSVR-----QGP-------------RNRTRTV-TNVVEGAYHAHQRVH-------- 254 Mycobacterium tuber...
20140268 201 RKP-ESIGhvELFHGTASa-LLLRHTTA--LVDEDRQRLAAfCSAHQAQLWLQGAE-QPLPVEPAAELGYSLg------- 268 Pseudomonas aeruginosa
20140227 189 SLPkN-LGhvELVHADNGiaMLLRHTGN--LAQTDRTLLTNfAQQENLMLFVQDD--QQITQLHGEAPYYIL---RD--- 257 Pasteurella multocida
20140047 185 SIV-QRMPqiEVAVGQDVtaLVLRILEP--LTSADEAELRAfADRHAVQFWLQPKG-PDTVYPFYPLDRALTyTLPEf-- 258 Ralstonia solanacearum
15609826 177 WPP---EAqlYVALDDDGe-RHVVCSVR-----QGP-------------RNRTRTV-TNVVEGAYHAHQRVH-------- 225 Mycobacterium tuber...
20140289 191 SQPeR-LGhvELVKGDNTrvLVLRHLGA--LIEQDQQRLTDfASQNQLTLYLMLEA-GELQHVQGEAPYCE----ET--- 259 Vibrio cholerae
20140309 189 DGr-RDVPqiEFIAGDAVvaLTVRHLQP--LSEADRLALIEfGKEHGIAIFLQSGGvESVRLLWPDEVLLAFr-LKPw-- 262 Xylella fastidiosa
464650   449 GYTFNFSAG--EFFQNNNSILPIVTKYVRDNLQApakgddNKTKFLVDAYCGSGLFSICSS-KGVDKVIGVEISADSVSF 525 baker's yeast
19553107 239 -SFWQAHTK--APAAYSEFIAEALTGLELVDVDK------RG-PVAWDLYGGVGLFAPIITsKLQAAVHSVELSPGSAEA 308 Corynebacterium glu...
1723812  259 GIKLHFDIR--DFIQVNSALNEPMVNTALDWLEL------SQQDCVLDLFCGMGNFTLPLAk-RVKSAVGIEGVFEMVQK 329 Haemophilus influenzae
15842227 255 RRSWRVPVT--AFWQAHRDAAAVYSDLIADWAQP------APGMTAWDLYGGAGVFAAVLG-EAVGESGRVLTVDTSRLA 325 Mycobacterium tuber...
20140268 269 DWQLTLAYRpgDFVQVNAPVNESMIRQALDWLAP------TADERVLDLFCGLGNFSLPLA-RRVARVVGVEGVAAMVER 341 Pseudomonas aeruginosa
20140227 258 GTKLQFDIR--DFIQVNAVVNQKMIDTALEWLEL------TSNDNVLDLFCGMGNFTLPISr-QVNQVVGIEGVGEMVEK 328 Pasteurella multocida
20140047 259 GITMPFKPT--DFTQVNHQINRVLMSRALKLLDA------RPGDRLLDLFCGIGNFTLPMA-TRGCEVMGIEGSEALTTR 329 Ralstonia solanacearum
15609826 226 RRSWRVPVT--AFWQAHRDAAAVYSDLIADWAQP------APGMTAWDLYGGAGVFAAVLG-EAVGESGRVLTVDTSRLA 296 Mycobacterium tuber...
20140289 260 GSRLSFLPS--HFIQVNRAVNQHMVVQALNWLEV------SPQERVLDLFCGLGNFTLPLAk-QAQAVVGVEGVDEMVQH 330 Vibrio cholerae
20140309 263 DVEFVFRPL--DFIQINGGLNEKMIAHALDLLGA------GFGERVLDLFCGLGNFTLPLA-RTVDEVVGVEGDIGLVER 333 Xylella fastidiosa
464650   526 AEKNAKANGVEN-CRFIVGKAEKLFESID-TPSENTSVILDPPRKGCDELFLKQLAAYIQP------------RLFTYRV 591 baker's yeast
19553107 309 GEEALAGLPVT---FHT-GRVEGMASQLP----SPNVVVLDPPRTGAGSDVLKSIAEAKPQl----------vIHIGCDP 370 Corynebacterium glu...
1723812  330 AAQNAERNQIKNiEFFQADLDQSFVEQPw-ANQSFNKILLDPPRSGAA-FALNALCELKAEk----------iLYVSCNP 397 Haemophilus influenzae
15842227 326 SGAARAALVDLPqVEVVTGSVRRVLAVQP---AGADLAVLDPPRSGAGREVVDLLAGAGVPr----------lIHIGCEA 392 Mycobacterium tuber...
20140268 342 AGANALANGLGNaHFFQADLSKALAEAPw-AEQGFTAVLLDPPRDGAF-EAVREMSSLGARr----------vVYVSCNP 409 Pseudomonas aeruginosa
20140227 329 AKRNAEQNQCDNvQFYQANLDQPFVQQHw-ASQHFNKILLDPPRTGAA-FALHALCELGAEk----------iLYVSCNP 396 Pasteurella multocida
20140047 330 ALANAQHNGLDGkTTFACRNLFEVSADDiaALGRFDRWLVDPPREGAL-AVSKAVAELSQRggeaaallpgriVYVSCNP 408 Ralstonia solanacearum
15609826 297 SGAARAALVDLPqVEVVTGSVRRVLAVQP---AGADLAVLDPPRSGAGREVVDLLAGAGVPr----------lIHIGCEA 363 Mycobacterium tuber...
20140289 331 ATHNAKLNQINNvAFYQANLEQDMTSASw-AQQKFAKVLLDPARAGAE-GIVDQLSALGAKr----------vVYVSCNP 398 Vibrio cholerae
20140309 334 ARENARRNGLGNaEFFVADLTRDQRDAPw-MRQGFDKLLLDPPRSGAI-EVLKQLPLKMFEr----------iVYVSCHP 401 Xylella fastidiosa
464650   592 MSIPRHVMSSTSS------KKQKTV--PPT-RLKA 617 baker's yeast
19553107 371 ATFARDVADWKLNgye-mdQLAVFNafPGThHFET 404 Corynebacterium glutamicum ATCC 13032
1723812  398 ATLVRDAEILCNFgyk-ieKSAVIDmfPHTgHLES 431 Haemophilus influenzae
15842227 393 ASFARDIGLYRGHgya-veKIKVFDafPLThYVEC 426 Mycobacterium tuberculosis CDC1551
20140268 410 ATLARDAGEMARQgyr-lkRAGILDmfPQTaHVEA 443 Pseudomonas aeruginosa
20140227 397 ATLVRDTAILLQFnyr-lkKVAMIDmfPNTgHLES 430 Pasteurella multocida
20140047 409 ATLARDAGLLVHEagyrlaGAGVVNmfPHTsHVES 443 Ralstonia solanacearum
15609826 364 ASFARDIGLYRGHgya-veKIKVFDafPLThYVEC 397 Mycobacterium tuberculosis H37Rv
20140289 399 ATLARDSQSLLSQgfr-leKLGMLDmfPHTsHLES 432 Vibrio cholerae
20140309 402 GSLARDADFLVNEqgfvlrAVGAMDmfPHTaHVES 436 Xylella fastidiosa
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