Conserved Protein Domain Family
Rli1

?
COG1245: Rli1 (this model, PSSM-Id:224166 is obsolete and has been replaced by 440858)
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis]
Statistics
?
PSSM-Id: 224166
Aligned: 16 rows
Threshold Bit Score: 960.6
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
19074958   9 NLTRLAIVNFELCKPSQCA-SECRKACPVNKTGKECIRI---------EkkcMISEVLCIG--CSACQKKCPFKAISIIN 76  Encephalitozoon cun...
11497625   1 MPLRIAVVDRERCQPKKCG-QECVKYCPRVRTGDETVKIed------kA---VISENLCVG--CGICVKKCPMHAIWIVG 68  Archaeoglobus fulgidus
14601191   1 ------MIDYDSCKPKKCS-YECIAVCPVNKSG-RGVAIdadmasrgkP---VIYEDACIG--CALCVKACPFDAIYIVN 67  Aeropyrum pernix
20092020   1 --MRIAILNKDKCQPRRCS-KECEKYCPRVRTGDETIVFedd----gkP---VISEELCVG--CGICINKCPFDAIMIIG 68  Methanosarcina acet...
20093531   4 IGRRVAVVDRERCKGGSKCdYVCQRFCPGVRTGRETITIded---tnkP---VISEELCSG--CGICAQKCPFDAIKVVR 75  Methanopyrus kandle...
18313282   1 -MVRVAVVDRDSCQPKKCG-HECVKYCPVNKSG-KVVWIdeq---lkkA---VISEALCIG--CGICVHKCPFEAITIVN 69  Pyrobaculum aerophilum
15897231   1 --MRVAVINYDFCKPDKCN-LECINFCPVDRSGGKAIELseiv--kgkP---VIYEETCIG--CGICVKKCPYEAISIVN 70  Sulfolobus solfatar...
13542329   1 --MHVAVLDKDRCHPKKCH-HECQYYCPPVRNHVMAIDFpdp---dgqP---LISETLCIG--CGICIRRCPFGAIRIVT 69  Thermoplasma volcanium
16082454   1 --MHVAVLDRDKCHPKKCH-HECQYYCPPVRNHVMAIDFpdp---dgqP---LISETLCIG--CGICIRRCPFGAIKIVT 69  Thermoplasma acidop...
15791346   2 ADDSIAVVDLDRCQPDRCN-YECSNYCPPNRTGKECITLrgedagdgdPdqvHISEEICLGesCGICVEKCPFDAIEIIN 80  Halobacterium sp. N...
19074958  77 LPTNLTKEITHRYGTNGFKLHRLPIPRPGKVLGLVGTNGIGKSTALKILSGEIKPNLGKYDS-PPGWETILGYFRGSELQ 155 Encephalitozoon cun...
11497625  69 LPEELEGREVHRYGKNGFVLYNLPVPRKGYVVGILGPNGTGKSTAIKILSGQLKPNLGKEEA---SWEEIFDRFAGTELL 145 Archaeoglobus fulgidus
14601191  68 LPMELEEEAVHRYGVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGgEPEWDEILKRFRGSELQ 147 Aeropyrum pernix
20092020  69 LPEALQ-EPTHRYGPNGFALFGLPVPRIGKVTGILGPNGIGKSTSVQILSGTLVPNFGQGKG---DWDTVLEHYAGTALH 144 Methanosarcina acet...
20093531  76 LPEELEEECVHKYEEGGFRLYRLPVPKPGKVTGVIGRNAIGKTTAAKILTGELKPNLGDPEA-DPDWDEVIRAFSGTELQ 154 Methanopyrus kandle...
18313282  70 LPDELERDCVHRYGPSGFKLYRLPILRRGKVVGILGRNALGKTTMAKILAGELVPNLCETEG-KTSAEDVIRQFRGTELQ 148 Pyrobaculum aerophilum
15897231  71 LPDELEGEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEVLKRFRGKEIY 149 Sulfolobus solfatar...
13542329  70 LPDELNKNVFHRYGVNGFRIYSLPTVVPGKVSAILGQNGLGKTTTLNILSGITVPNLGNYDK-PPSKDAVIDRFARTTMG 148 Thermoplasma volcanium
16082454  70 LPDELNKEVLHRYGVNGFRIYSIPTISPGRVSAILGQNGLGKTTTLNILSGITVPNLGSYER-PPSKEEVIEKFARTEMG 148 Thermoplasma acidop...
15791346  81 LPQELDDQPTHRYGENSFSLYGLPVPESGKVTGLLGPNGIGKSTAVDLLAGEVTPNLGRHES-PPDWDEVVDEYRGTELQ 159 Halobacterium sp. N...
19074958 156 GYFTKVLEGQLRITSKIQYIDRLPKLLKKrfspEVKSMVKSLSLDGtetdtdnrllvrsvleemdqrqRKDYYIEKMCLG 235 Encephalitozoon cun...
11497625 146 DYLKGIKEGAIRVSQKPQYIEAIPKVYSG----KAIELLKRVDERG----------------------MLDAVVEKLGLA 199 Archaeoglobus fulgidus
14601191 148 TYFRKLVDGKLRVAHKIQYVELVPRRLKG----RVRDLLKRADERG----------------------VALELAEQVGLD 201 Aeropyrum pernix
20092020 145 DYFKDVVDGKVKVSQKPQYVDLIPKAFKG----KTSELLEKTDERG----------------------FLDELIDRLDLR 198 Methanosarcina acet...
20093531 155 EHFRRIADGDLRPVMKPQYVEALPKVVKG----RVKDVLEDVDELG----------------------VVDELIERLGLT 208 Methanopyrus kandle...
18313282 149 TYFSELYSNKLRAVHKIQYIELIPIYLKG----TVGEIVKKA---G----------------------IREELVKRFGLD 199 Pyrobaculum aerophilum
15897231 150 NYFKELYSNELKIVHKIQYVEYASKFLKG----TVNEILTKIDERG----------------------KKDEVKELLNMT 203 Sulfolobus solfatar...
13542329 149 AYFKGLYEENKRAVLKNQYVDYIPKVVSG----TIGEILRKNNENG----------------------NFDEVVSLLNLE 202 Thermoplasma volcanium
16082454 149 AYFRGLYEQNKRAVLKNQYVDYIPKVVKG----TIGEVLKKNDETG----------------------RYSDVVTQLNLE 202 Thermoplasma acidop...
15791346 160 DYLAAVRDGDVDVAKKPQYVDEIPAQFDG----NTRQLLEATDERG----------------------VLDDLVDRLSIR 213 Halobacterium sp. N...
19074958 236 NILDRDVEELSGGELQRLSLALACMQQSDVYIFDEPSSYLDVKQRLSAAKEIRELCED-NSYVIVVEHDLAILDLMSDFG 314 Encephalitozoon cun...
11497625 200 EAIKRDVKDLSGGELQRLAIAACILRDADFYFFDEVTSYLDIYQRIAVAGVIRELAA--EKTVMIVEHDLAILDMLADFV 277 Archaeoglobus fulgidus
14601191 202 KVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPg-AYVMVVEHDLAVLDYVSDLV 280 Aeropyrum pernix
20092020 199 GVVERKISELSGGELQRVAIAACAARDAQFYFFDEISPYLDIYQRINVARLVQEISK--DRAVLVVEHDLAILDMLTDVI 276 Methanosarcina acet...
20093531 209 EVTDRRISDLSGGELQRVAIAAALSRDADFLVFDEPCSYLDVEQRLSLARSLREIVEDrGIPMLVIEHDLATLDYVADVV 288 Methanopyrus kandle...
18313282 200 KLLNREVDKLSGGELQKLAVAAALSKDVDVYIFDEPATHLDVVERVKVADAIREYTQN--KYVLVVEHDLTVLDFLADNI 277 Pyrobaculum aerophilum
15897231 204 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDEPSSYLDVRERMNMAKAIRELLKN--KYVIVVDHDLIVLDYLTDLI 281 Sulfolobus solfatar...
13542329 203 NALSKDVKECSGGELQKLAIGTTLEKEADIYLFDEMTSYLDIGERLNVSNIVQDLSK--KKTVIVVEHDLAILDWLADSV 280 Thermoplasma volcanium
16082454 203 NSVNKNVSECSGGELQRLAIGTVLEKDADIYLFDEMTSYLDINERLNASRIVQDLAR--KKTVIVVEHDLAILDWLADSV 280 Thermoplasma acidop...
15791346 214 PVMDQAIDSLSGGELQRVALAATLARDADFYFVDELTPYLDIGQRVTAARLVRELAEDaDKAVLVVEHDLAVLDMLADSI 293 Halobacterium sp. N...
19074958 315 CVLYGQSGAYGVITAPYAIKSAINIFLDGYIPTENMRFRPSELKFDISERPTRDAe--------kRAQYWYGGMTKTYE- 385 Encephalitozoon cun...
11497625 278 HITYGTPGVFGVVTNAKGARVGINQYLRGYLAEENIRIRDKPIEFEVFQPRESVg---------eNILVEYPSFTKSYe- 347 Archaeoglobus fulgidus
14601191 281 HILYGEPGAYGIVSKPYSTREGINVFLQGYLPAENIRLRKEPILFRKPAPEAQPAapgggrqasrRRIVGWTGLRVALD- 359 Aeropyrum pernix
20092020 277 HIAYGEPAGFGVITLPKSVRVGINQYLKGYLPEENIRIRPEAIRFEVHPPREDAq---------fQSMVSFNSFSKQYGd 347 Methanosarcina acet...
20093531 289 HVLYGKRGAYGVVSKPMGVGKGINAYLKGYLEAENVRFRDEEVVLPEKPAEAEAGe--------rDTLVEYGELVKEYDg 360 Methanopyrus kandle...
18313282 278 VIVYGKPGAYGIVSHPAGAREAINEYLSGYISSENMRIRDRPIKFETRPPERKsgk--------aaRLVEWEDIDVDLG- 348 Pyrobaculum aerophilum
15897231 282 HIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDlsk------dlkTKMKWTKIIKKLG- 354 Sulfolobus solfatar...
13542329 281 NIVYGDPGVYGIFSEPLSTNRAINAYLSGFLREENVRIRSYPIEFEEKSSKRDKf---------eHILITWTDIKKKLG- 350 Thermoplasma volcanium
16082454 281 NIVYGDPGVYGIFSEPLSTNRAINAYLSGFLKEENVRIRSYPIEFEEKTSRRDKf---------tQDLISWTELKKTLG- 350 Thermoplasma acidop...
15791346 294 HVAYGEPSVYGVVTPPKSVRNGINEYLRGYLENENMRVRPEAIEFEEHAPRSASr---------rDTLVSYPDMTKSYGd 364 Halobacterium sp. N...
19074958 386 -SFRLEVKEGSFSDSEIIVFLGENGMGKTTLVGLIAGLIKPDRGDe------FTKLSYSLKPQKILPK--YKGTVRELFM 456 Encephalitozoon cun...
11497625 348 -gFRLEVEGGEIYQGEVLGVVGSNATGKSTFVKVLAGVIEDDek------kvELDVKVSYKPQYVKAD--VNMQVGMFLR 418 Archaeoglobus fulgidus
14601191 360 -GFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAvy---pyVEDLRVSYKPQYISPEslPDATVEQVLK 435 Aeropyrum pernix
20092020 348 -gFSLKATGGSLREGEVLGIVGPNGIGKSTFVKVLAGEIKPD--Egd----pgIEVKISYKPQYIKAD--TPVSVQDFLR 418 Methanosarcina acet...
20093531 361 -DFRLEVEPGEIRVGEIIGALGPNAIGKTTFVKLLAGVLEPTGGg------vDVDVKVSYKPQYLEVD--SDEPVEQVLR 431 Methanopyrus kandle...
18313282 349 -GFQLEVSSSYIARGEVVGVIGPNGIGKTTFLKVLVGEIKPVKGAv------sSTPRISYKPQYIRDIavKNHDVPVSLW 421 Pyrobaculum aerophilum
15897231 355 -DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSvt-----pEKQILSYKPQRIFPN--YDGTVQQYLE 426 Sulfolobus solfatar...
13542329 351 -DFSLDVHAGQIHTGEISGVLGRNALGKSTFVMMLAGVMNPDEGs------iSQNVKVSYKPQYISTD--FKGTVSDLIA 421 Thermoplasma volcanium
16082454 351 -DFALEVSPGKIHRSEIVGILGKNALGKSTFIMMLAGVLNPDSGs------iSQNVRVSYKPQYISTS--FDGSVSDLIR 421 Thermoplasma acidop...
15791346 365 gEFTLSVEGGDINRNEVLGVVGPNGIGKSTFAQLLAGGLEPSSVGgeagaalDVGLDIAYKPQYVEAD--QQMRVDAFLS 442 Halobacterium sp. N...
19074958 457 SKIRSS-FMDQSFVNDVIKPLSIEYTYEQQVQNLSGGELQRIAIAMCLGKDANVYLIDEPSAFLDSDQRIAISKIIKRFI 535 Encephalitozoon cun...
11497625 419 RINPM--IDSSYYKTEFLKPLMLENLMDRYLDDLSGGELQRVAIVACLLREADLYLLDEPSAHLDVEQRTEAARVIRRFA 496 Archaeoglobus fulgidus
14601191 436 AANPAIlAPGSWLNLELVKRMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIV 515 Aeropyrum pernix
20092020 419 GITKR--FGTSYYEVEIANPLQLERIYESLLTELSGGELQRVAIAACLSQEADLYILDEPSAHLDVEQRSMVTKVINRFA 496 Methanosarcina acet...
20093531 432 RTAGSE-WGSSWYRSNIVEPLDLEYLFDRPLCELSGGELQRVAVAAALSREADLYLLDEPSAYLDVEERINTARVIRRVI 510 Methanopyrus kandle...
18313282 422 LAQQAGdYTENPIWPDLNAGFNLGPLLERRLGELSGGELQRVVVAAALLKKADLYVLDEPMAYLDVEQRITVARTIRRII 501 Pyrobaculum aerophilum
15897231 427 NASKDAlSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDEPSSYLDVEERYIVAKAIKRVT 506 Sulfolobus solfatar...
13542329 422 SALKDR-AEDTYVKNEIFHPLNIPDIMENPVDGLSGGEMQRLSIAITLSREADVYLIDEPSAHLDSSYRMVVAKVIRRVM 500 Thermoplasma volcanium
16082454 422 TSLGER-SDDSFVKNEIFHPLSIEDIMENPVDGLSGGELQRLSIAITLARDADIYLLDEPSAHLDSSFRMVVAKVIRRVM 500 Thermoplasma acidop...
15791346 443 SVTDD--VGTSYWQTEIADPLQLDPIMEQRLPDLSGGERQRVAIAATLSKDADLYLLDEPSAHLDVEQRVLATRAIRRFA 520 Halobacterium sp. N...
19074958 536 YSNGKIAFIVEHDLIVGTYLADKVVVFQGEPGVSSVASPPMGLLDGMNIFLKSLDVTFRRDSSNLRPRVNKPGSAKDRIQ 615 Encephalitozoon cun...
11497625 497 LNTGKSVLVVDHDIYLIDMVSDRLLVFEGQPGKHGIARRPRGMREGMNLFLSKLGITFRRDEETKRPRVNKPDSRLDREQ 576 Archaeoglobus fulgidus
14601191 516 ETREAAALVVEHDLMILDYVSDRIMLVTGEPGVRGHVDDPRPVKEGMNLLLQNLGVTVRKDEQTGRPRLNKEGSYLDRMQ 595 Aeropyrum pernix
20092020 497 ENNQKTAMVVDHDIYMIDMLSQRLLVFEGKPSVYGEAHGPFSMESGMNRFLENLGITFRRDEETRRPRVNNLGSRLDREQ 576 Methanosarcina acet...
20093531 511 EARDAAAIVVDHDLLLLDYISDRMMVFEGEPGKHGRANPPESKREAMNRFLSNLGVTFRRDPETRRPRANKPGSHRDREQ 590 Methanopyrus kandle...
18313282 502 EESEVAALIVEHDIAMLDYMSNAIMPFIGEPGVRGYSPGPTDMRTGMNTFLKWADASFRRDVKSGRPRLNKPGSALDREQ 581 Pyrobaculum aerophilum
15897231 507 RERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQ 586 Sulfolobus solfatar...
13542329 501 ENTKKTALVVDHDIYLIDLISDSLIVFSGEPGSHGASDGPMDMKEGMNRFLKMVGVTFRRDQSSNRPRINKKGSSLDRLQ 580 Thermoplasma volcanium
16082454 501 ENTKKTAMVVDHDIYLIDLISDSLIVFSGVPGSHGHSEGPMDMREGMNRFLKIVGVTFRRDQNSRRPRINKENSSLDRMQ 580 Thermoplasma acidop...
15791346 521 ENNESTVMVIDHDIYMIDLVSDRLMVFDGEPAEHGQASPPQAMRSGMNEFLANLDVTFRRDERLGRPRINKPDSQLDKQQ 600 Halobacterium sp. N...
19074958 616 KENNQYFFS 624 Encephalitozoon cuniculi
11497625 577 KAAGEYYYY 585 Archaeoglobus fulgidus
14601191 596 RAR-KLYYA 603 Aeropyrum pernix
20092020 577 KESGNYYYS 585 Methanosarcina acetivorans C2A
20093531 591 KRRGEYFYA 599 Methanopyrus kandleri AV19
18313282 582 KERGELYYV 590 Pyrobaculum aerophilum
15897231 587 KERGDYYSM 595 Sulfolobus solfataricus
13542329 581 KEENRYYYA 589 Thermoplasma volcanium
16082454 581 KEQNNYYYS 589 Thermoplasma acidophilum
15791346 601 KRDGEYYYT 609 Halobacterium sp. NRC-1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap